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The map label for this gene is yddU [C]

Identifier: 146337692

GI number: 146337692

Start: 574405

End: 576120

Strand: Direct

Name: yddU [C]

Synonym: BRADO0560

Alternate gene names: 146337692

Gene position: 574405-576120 (Clockwise)

Preceding gene: 146337690

Following gene: 146337694

Centisome position: 7.7

GC content: 67.25

Gene sequence:

>1716_bases
GTGTTCCAGAACGAGGCGATCTTGACATCCGAATTGCCACAGACCTCGATGATCCTGGCCTCCCTCGGCCAAGCCGCCTT
CGTTTGGGATCTGGCGAGCGATGTGATCGTCTGGAGCGATCACGTCGGCGCGGTGTTCGCCGACGTCCCGCTGCCGCAGC
TCTGCAATGGCGGTGAATTCGCCAAGCTGATCGAGCCAGACCGCGGCATCCGCTCCGAGGTGATGCGCCAGGCCGTGCCG
CTCCATGGCGCCGCCGGCACCCCCTACCGCATCGAGTATGGCGTGCGGACCCGCGCCGGCGCGCCGCTGATCTGGGTCGA
GGAGACCGGTTGCTGGTACGCTGGCTCCGACGGGCGGCCCTCCCGGGCCCAGGGTATCGTCCGTATAAACAACGAGCGTC
ACGCGCGCGAGGAGCAGCTGGTCAAGCTGTCGCGCCACGACCCGCTCACTGGAGAGCTGAACCGCACGAACCTCCTCGCC
ACTCTTGCCGAGGTGATCGAGGAATCGCAGCGCTTCCGCTTCGCCTGCGCTTTCATGCTGGTCGGCATCGATCATCTCGC
CCGCATCAACGACGCGTTCGGCTTCGATGTCGCCGACGGCGTGGTGCTGGAGGTCGCGCAACGGATCCGGGCGCGGCTGC
GCGGCGGCGATGCGCTGGGGCGGTTCTCGGGCAACAAGTTCGGGCTGATCCTGAAGAGCTGCACGATGGACGACATGACC
ATCGCAGCCGAGCGCTTCCTCGCCGCGGTTCGCGACGACGTGGTTCCGACCAAGTCGGGTCCGGTCGCGGTCACCGCGAC
GATCGGGGCTGTCAGCGTGCCGCGCCACGCCCGGTCGGTCGAGGAGGCCGTCAATCGCGCTCATGAGACGCTCGATTCCG
CCAAGCGACGCCGGATCGGTTCGTTCTCGACCTGGCGGCCGAATGTCGAGCGCGACGCGCAGCGCAAGGTCAACATCCGC
GTGACCGACGAGATCGTCACCGCGCTCAACGAGCGCCGCATCGTCACCGCGTTCGAGCCGGTGGTGAACGCGCAGACGCG
CACGACGGCGTTCTACGAATGCCTGGTCCGGATGCGGCAGGACGACGGCCGCGCCCTGCTGGCGCCTGACGTCGTTCCGG
TCGCCGAGCGGCTCGGCCTGATCCGGCTCGTCGATCATCGAATCCTCGAGCTGGTCGTTGCCGAGCTGGCAGCCTCGCCA
AACGTGACGCTCAGTCTCAACATCTCGCCGGAGACCACCATGGATCCGGACTGGTGGGCCTCGATCGAATCGATGATGCG
CGCCCATCCGGGCGTCGCCGAGCGGCTGATCGTCGAGATCACCGAGACGGTGGAGATCCAGGACATCGACGATCTGCGCG
GCTTCGTCACCCGCTTGAAGGATCTGGGCAGCCGGATCGCGATCGACGATTTCGGCGCCGGCCACACCTCGTTCCGCAAC
CTGCGCAAGCTCGGCGTCGACATCGTCAAGATCGATGGCGCGTTCGTGCAGAATCTGGTGCGCTCGGCCGACGATCGGGC
GTTCGTGCAGACCCTGGTGGAGCTGGCGCGACGGCTGCAGATCAAGACGGTCGCGGAGTGGGTGCAGGATGATGCGTCGG
TCGCGCTGCTGCGTGACTGGGGCTGCGACTACATCCAGGGCCGGGTGATCGGCCTCGCCTCGGTCGAGCGCCCCTGGATC
GAGCAGGGCCGGATGGAGTTGCCGGCGGCGAGCTGA

Upstream 100 bases:

>100_bases
CGTTAACCAGAGATGCGTAGTCTGATTCGCGAGGTCCGCTTCCGCTGCGCGCGCGGGTAGGTGGCGGCCGTCCTGAAAAT
CGACGCCGGGCTGCGCCGGC

Downstream 100 bases:

>100_bases
GCTGCCGCCGGCATCCGAGATTCATGCTGGCAGGTCAGCCCTGCTGCTCGTCCTTCTTCGGCTCGGACATGCGGTCGAGC
CGGTCCTGCATTTCCTTCAT

Product: putative diguanylate cyclase/phosphodiesterase (EAL)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MFQNEAILTSELPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEFAKLIEPDRGIRSEVMRQAVP
LHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRPSRAQGIVRINNERHAREEQLVKLSRHDPLTGELNRTNLLA
TLAEVIEESQRFRFACAFMLVGIDHLARINDAFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMT
IAAERFLAAVRDDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWRPNVERDAQRKVNIR
VTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQDDGRALLAPDVVPVAERLGLIRLVDHRILELVVAELAASP
NVTLSLNISPETTMDPDWWASIESMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRN
LRKLGVDIVKIDGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDWGCDYIQGRVIGLASVERPWI
EQGRMELPAAS

Sequences:

>Translated_571_residues
MFQNEAILTSELPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEFAKLIEPDRGIRSEVMRQAVP
LHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRPSRAQGIVRINNERHAREEQLVKLSRHDPLTGELNRTNLLA
TLAEVIEESQRFRFACAFMLVGIDHLARINDAFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMT
IAAERFLAAVRDDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWRPNVERDAQRKVNIR
VTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQDDGRALLAPDVVPVAERLGLIRLVDHRILELVVAELAASP
NVTLSLNISPETTMDPDWWASIESMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRN
LRKLGVDIVKIDGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDWGCDYIQGRVIGLASVERPWI
EQGRMELPAAS
>Mature_571_residues
MFQNEAILTSELPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEFAKLIEPDRGIRSEVMRQAVP
LHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRPSRAQGIVRINNERHAREEQLVKLSRHDPLTGELNRTNLLA
TLAEVIEESQRFRFACAFMLVGIDHLARINDAFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMT
IAAERFLAAVRDDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWRPNVERDAQRKVNIR
VTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQDDGRALLAPDVVPVAERLGLIRLVDHRILELVVAELAASP
NVTLSLNISPETTMDPDWWASIESMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRN
LRKLGVDIVKIDGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDWGCDYIQGRVIGLASVERPWI
EQGRMELPAAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=490, Percent_Identity=23.0612244897959, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=27.8225806451613, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787541, Length=431, Percent_Identity=23.8979118329466, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=28.9795918367347, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=28.1124497991968, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI226510982, Length=421, Percent_Identity=24.4655581947743, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=27.5, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081743, Length=229, Percent_Identity=30.1310043668122, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1787055, Length=453, Percent_Identity=22.5165562913907, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=26.5873015873016, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081845, Length=225, Percent_Identity=26.2222222222222, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=26.4705882352941, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=26.457399103139, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788381, Length=491, Percent_Identity=22.1995926680244, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=25.1533742331288, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=25.9887005649718, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=29.375, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 63234; Mature: 63234

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQNEAILTSELPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEF
CCCCCCEECCCCCHHHHHHHHCCCHHEEHHHHCCEEEEECCCCEEEECCCCHHHCCCCCC
AKLIEPDRGIRSEVMRQAVPLHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRP
HHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCEEEEECCCCEEECCCCCC
SRAQGIVRINNERHAREEQLVKLSRHDPLTGELNRTNLLATLAEVIEESQRFRFACAFML
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIDHLARINDAFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMT
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCEEEEEEEECCCCHHH
IAAERFLAAVRDDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIG
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SFSTWRPNVERDAQRKVNIRVTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQ
CCCCCCCCCCCCCHHEEEEEEHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHC
DDGRALLAPDVVPVAERLGLIRLVDHRILELVVAELAASPNVTLSLNISPETTMDPDWWA
CCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
SIESMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRN
HHHHHHHHCCCHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
LRKLGVDIVKIDGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDW
HHHHCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHC
GCDYIQGRVIGLASVERPWIEQGRMELPAAS
CCCHHCCEEEEECCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure
MFQNEAILTSELPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEF
CCCCCCEECCCCCHHHHHHHHCCCHHEEHHHHCCEEEEECCCCEEEECCCCHHHCCCCCC
AKLIEPDRGIRSEVMRQAVPLHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRP
HHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCEEEEECCCCEEECCCCCC
SRAQGIVRINNERHAREEQLVKLSRHDPLTGELNRTNLLATLAEVIEESQRFRFACAFML
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIDHLARINDAFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMT
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCEEEEEEEECCCCHHH
IAAERFLAAVRDDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIG
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SFSTWRPNVERDAQRKVNIRVTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQ
CCCCCCCCCCCCCHHEEEEEEHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHC
DDGRALLAPDVVPVAERLGLIRLVDHRILELVVAELAASPNVTLSLNISPETTMDPDWWA
CCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
SIESMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRN
HHHHHHHHCCCHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
LRKLGVDIVKIDGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDW
HHHHCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHC
GCDYIQGRVIGLASVERPWIEQGRMELPAAS
CCCHHCCEEEEECCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]