| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146337685
Identifier: 146337685
GI number: 146337685
Start: 568145
End: 570061
Strand: Direct
Name: 146337685
Synonym: BRADO0553
Alternate gene names: NA
Gene position: 568145-570061 (Clockwise)
Preceding gene: 146337681
Following gene: 146337688
Centisome position: 7.62
GC content: 69.17
Gene sequence:
>1917_bases ATGTGTTGGTCACTCCGATTGCGTGGTTTCCGATGGGGCGGGTTTCTGCTCGCGGCCGCGCTCCTGCTGGTCGGCCACCC CGCGCTCGCCGACAAACGGGTGGCGCTCGTCATCGGCAATTCCGCCTATCAGAACGTGCCGCAGCTGGCCAACCCCGCCA ATGACGGCGCGGTGATGACTCAGACGTTCAAGAATGCCGGGTTCGATGTCGTCGACTACCGGCGCGATCTCACCGCGCGC GAGACCCGGCGGGCGCTGCGCGATTTTGCCGACGCGGCCCGCGATGCCGATATCGCCGTGGTCTATTATGCCGGCCACGG CATGGAGGTCGAAGGCTCGAACTATCTCATTCCGATCGATGCCAGGCTGGAGCGCGACACCGACGTCTATGACGAGACGC TGTCGCTCGACCGCATCCTGGTCGCCGTCGAGCCGGCCAAGAAGCTGCGGCTCGTCATTCTCGACGCCTGCCGCGACAAT CCCTTCACCCGCAACATGCAGCGGACGGTGGCGACCCGCAGCCTCGGCCGCGGTCTTGCCAAGGTCGAGCCGACCAGCCC GAACACGCTGATCGCCTATTCAGCCAAGGCCGGTTCAACGGCCCAGGATGGCGACGGCAATAACTCGCCGTTCACCATGG CGCTGTCGCGCCATATCGCGACACCCGGCCTCGATGTCCGCAAGGCGTTCGGCTTCGTCCGCGACGAGGTGCTGAAGTCG ACCAGCAATCGGCAGGAGCCGTTCGTGTACGGCTCGCTCGGCGGCGAGGACGTGCCGCTCGTGCCTGGCGTGCCGCGCGT CGTCACCCAGATGCCGGTGACGCCGCCGCCCGCCAATCCGCAGGCCGATATCCGCCGCGACTATGAGCTCGCCATGCAGG TCGGCAACAAGGGCGCGCTGAACGCTTTCCTGGCGCAATATCCCGACGGATTCTATGCCAGCCTCGCCAAGCTGCAGCTG GAGAAGCTGACGGCCGAGGAGAACCGCGCCGCGGCGGCCGAGAAGGCACGGGTCACGGAAGCCGAGCGGGCGCGGCTGGC GTCCGAAGGCGCGCGCAAGGATACGCTGGCCAAGGCGGAAGCCGAGGCCAAGGCGGCCGAGCAGGCGCGTCTCGCGGCCG AGCGGGCCAATCAGCTGGCTCAGCAGCAGGCGGCGGAGGCCGAACGCAAGCGACAGGAGCAGCAGCTCGCGGCAGCCGAC AATCCGCGCGCGGCGACCTCACCGGCCGCAGTCCCGCAGCAGGGGCCGCAGGTCGCCTCGCTGACGCCGGCGTCCCAGCC CGCGGATCTCACCAAGTCGGTGCAACTCGAGCTGCGGCGCGTCGGCTGCCTGACCGACGAGGCCGACGGCGATTGGGGCT CGGCGTCGCGCCGCTCGCTGTCGCAGTTCAACCGCTACGCCGGCACCAAGCTCGACACCCAGGCCGCGTCGGCCGACGCG CTGCAGGCGATCCAGCTGAAACAGGCCCGCGTCTGCCCGCTGGTCTGTCCGCACGGCACGAAATCCGATGGCGATCGCTG CACCCGCATCGTCTGCGCCGAGGGCTCGTTCCTGAACGATGACAACGAGTGCGAAAAGCGCCGCGACAAGAAGCCGGTCG CCAAGCGCGACAGCAGCGACGACGAGGACGCGGCGCCGCGCCGCCGCACCCGCGCGGTTCCCGAGCCGGGTCTGGCGATG CCGGCTCCCAACGTTGGCGTCGGGGTCGGCATCGGTGTCGGCGGCGTCGGCCTGGGCGTCGGGATGGCGCCGACCATAGG CGCCCCCAAGCCGCAGGCGGAGGCGCGGCCCAAGCCGTCGTCGGGCCAGATCTATTGCGACTCCTATATTTGCCGTCCTG TCAGGCCGGGCTGCCGGCTGGACTTCCGCGGCGGCGGCAACCGCTACGGCAACGCCCATGTCGAGGTTTGCAATTGA
Upstream 100 bases:
>100_bases GTTCCGGGGATAAAGGCTTGCGTGATTCCGATCACAAGCCGGAAGGGCTGGGCCTGATAGGCAGAGCCTTGAAGATCTCC CAGGCTGTGGGGTAAATGCG
Downstream 100 bases:
>100_bases TCAGGACGAGATCGCGCTGGCGGCGATATTGACCATCAGCGCGACGAGGGCGGTGTTGTAGACGAACGAGATGATGCCGT GAACGGTCGCTGTGCGGCGG
Product: putative caspase (peptidase)
Products: NA
Alternate protein names: Caspase Domain Protein; Caspase-Like Domain- And TPR Repeat-Containing Peptidase; Peptidase C; Caspase-Like Domain-Containing Protein; Peptidase Protein; Caspase Domain-Containing Protein; TPR Repeat-Containing Caspace; GUN4-Like Family; Caspase; Peptidylprolyl Isomerase; Caspase-1 P; ICE-Like Protease
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MCWSLRLRGFRWGGFLLAAALLLVGHPALADKRVALVIGNSAYQNVPQLANPANDGAVMTQTFKNAGFDVVDYRRDLTAR ETRRALRDFADAARDADIAVVYYAGHGMEVEGSNYLIPIDARLERDTDVYDETLSLDRILVAVEPAKKLRLVILDACRDN PFTRNMQRTVATRSLGRGLAKVEPTSPNTLIAYSAKAGSTAQDGDGNNSPFTMALSRHIATPGLDVRKAFGFVRDEVLKS TSNRQEPFVYGSLGGEDVPLVPGVPRVVTQMPVTPPPANPQADIRRDYELAMQVGNKGALNAFLAQYPDGFYASLAKLQL EKLTAEENRAAAAEKARVTEAERARLASEGARKDTLAKAEAEAKAAEQARLAAERANQLAQQQAAEAERKRQEQQLAAAD NPRAATSPAAVPQQGPQVASLTPASQPADLTKSVQLELRRVGCLTDEADGDWGSASRRSLSQFNRYAGTKLDTQAASADA LQAIQLKQARVCPLVCPHGTKSDGDRCTRIVCAEGSFLNDDNECEKRRDKKPVAKRDSSDDEDAAPRRRTRAVPEPGLAM PAPNVGVGVGIGVGGVGLGVGMAPTIGAPKPQAEARPKPSSGQIYCDSYICRPVRPGCRLDFRGGGNRYGNAHVEVCN
Sequences:
>Translated_638_residues MCWSLRLRGFRWGGFLLAAALLLVGHPALADKRVALVIGNSAYQNVPQLANPANDGAVMTQTFKNAGFDVVDYRRDLTAR ETRRALRDFADAARDADIAVVYYAGHGMEVEGSNYLIPIDARLERDTDVYDETLSLDRILVAVEPAKKLRLVILDACRDN PFTRNMQRTVATRSLGRGLAKVEPTSPNTLIAYSAKAGSTAQDGDGNNSPFTMALSRHIATPGLDVRKAFGFVRDEVLKS TSNRQEPFVYGSLGGEDVPLVPGVPRVVTQMPVTPPPANPQADIRRDYELAMQVGNKGALNAFLAQYPDGFYASLAKLQL EKLTAEENRAAAAEKARVTEAERARLASEGARKDTLAKAEAEAKAAEQARLAAERANQLAQQQAAEAERKRQEQQLAAAD NPRAATSPAAVPQQGPQVASLTPASQPADLTKSVQLELRRVGCLTDEADGDWGSASRRSLSQFNRYAGTKLDTQAASADA LQAIQLKQARVCPLVCPHGTKSDGDRCTRIVCAEGSFLNDDNECEKRRDKKPVAKRDSSDDEDAAPRRRTRAVPEPGLAM PAPNVGVGVGIGVGGVGLGVGMAPTIGAPKPQAEARPKPSSGQIYCDSYICRPVRPGCRLDFRGGGNRYGNAHVEVCN >Mature_638_residues MCWSLRLRGFRWGGFLLAAALLLVGHPALADKRVALVIGNSAYQNVPQLANPANDGAVMTQTFKNAGFDVVDYRRDLTAR ETRRALRDFADAARDADIAVVYYAGHGMEVEGSNYLIPIDARLERDTDVYDETLSLDRILVAVEPAKKLRLVILDACRDN PFTRNMQRTVATRSLGRGLAKVEPTSPNTLIAYSAKAGSTAQDGDGNNSPFTMALSRHIATPGLDVRKAFGFVRDEVLKS TSNRQEPFVYGSLGGEDVPLVPGVPRVVTQMPVTPPPANPQADIRRDYELAMQVGNKGALNAFLAQYPDGFYASLAKLQL EKLTAEENRAAAAEKARVTEAERARLASEGARKDTLAKAEAEAKAAEQARLAAERANQLAQQQAAEAERKRQEQQLAAAD NPRAATSPAAVPQQGPQVASLTPASQPADLTKSVQLELRRVGCLTDEADGDWGSASRRSLSQFNRYAGTKLDTQAASADA LQAIQLKQARVCPLVCPHGTKSDGDRCTRIVCAEGSFLNDDNECEKRRDKKPVAKRDSSDDEDAAPRRRTRAVPEPGLAM PAPNVGVGVGIGVGGVGLGVGMAPTIGAPKPQAEARPKPSSGQIYCDSYICRPVRPGCRLDFRGGGNRYGNAHVEVCN
Specific function: Unknown
COG id: COG4249
COG function: function code R; Uncharacterized protein containing caspase domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68579; Mature: 68579
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: PS50208 CASPASE_P20
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCWSLRLRGFRWGGFLLAAALLLVGHPALADKRVALVIGNSAYQNVPQLANPANDGAVMT CCEEEEECCEECHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCHHHCCCCCCCCEEH QTFKNAGFDVVDYRRDLTARETRRALRDFADAARDADIAVVYYAGHGMEVEGSNYLIPID HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCEEEEEC ARLERDTDVYDETLSLDRILVAVEPAKKLRLVILDACRDNPFTRNMQRTVATRSLGRGLA CCCCCCCHHHHHHHCCCEEEEEECCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCE KVEPTSPNTLIAYSAKAGSTAQDGDGNNSPFTMALSRHIATPGLDVRKAFGFVRDEVLKS EECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHH TSNRQEPFVYGSLGGEDVPLVPGVPRVVTQMPVTPPPANPQADIRRDYELAMQVGNKGAL CCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH NAFLAQYPDGFYASLAKLQLEKLTAEENRAAAAEKARVTEAERARLASEGARKDTLAKAE HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AEAKAAEQARLAAERANQLAQQQAAEAERKRQEQQLAAADNPRAATSPAAVPQQGPQVAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE LTPASQPADLTKSVQLELRRVGCLTDEADGDWGSASRRSLSQFNRYAGTKLDTQAASADA CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCHHH LQAIQLKQARVCPLVCPHGTKSDGDRCTRIVCAEGSFLNDDNECEKRRDKKPVAKRDSSD HHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCC DEDAAPRRRTRAVPEPGLAMPAPNVGVGVGIGVGGVGLGVGMAPTIGAPKPQAEARPKPS CCCCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCC SGQIYCDSYICRPVRPGCRLDFRGGGNRYGNAHVEVCN CCCEEECCEECCCCCCCCEEEECCCCCCCCCEEEEECC >Mature Secondary Structure MCWSLRLRGFRWGGFLLAAALLLVGHPALADKRVALVIGNSAYQNVPQLANPANDGAVMT CCEEEEECCEECHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCHHHCCCCCCCCEEH QTFKNAGFDVVDYRRDLTARETRRALRDFADAARDADIAVVYYAGHGMEVEGSNYLIPID HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCEEEEEC ARLERDTDVYDETLSLDRILVAVEPAKKLRLVILDACRDNPFTRNMQRTVATRSLGRGLA CCCCCCCHHHHHHHCCCEEEEEECCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCE KVEPTSPNTLIAYSAKAGSTAQDGDGNNSPFTMALSRHIATPGLDVRKAFGFVRDEVLKS EECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHH TSNRQEPFVYGSLGGEDVPLVPGVPRVVTQMPVTPPPANPQADIRRDYELAMQVGNKGAL CCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH NAFLAQYPDGFYASLAKLQLEKLTAEENRAAAAEKARVTEAERARLASEGARKDTLAKAE HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AEAKAAEQARLAAERANQLAQQQAAEAERKRQEQQLAAADNPRAATSPAAVPQQGPQVAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE LTPASQPADLTKSVQLELRRVGCLTDEADGDWGSASRRSLSQFNRYAGTKLDTQAASADA CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCHHH LQAIQLKQARVCPLVCPHGTKSDGDRCTRIVCAEGSFLNDDNECEKRRDKKPVAKRDSSD HHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCC DEDAAPRRRTRAVPEPGLAMPAPNVGVGVGIGVGGVGLGVGMAPTIGAPKPQAEARPKPS CCCCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCC SGQIYCDSYICRPVRPGCRLDFRGGGNRYGNAHVEVCN CCCEEECCEECCCCCCCCEEEECCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA