| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is glnD [H]
Identifier: 146337664
GI number: 146337664
Start: 539728
End: 542523
Strand: Reverse
Name: glnD [H]
Synonym: BRADO0530
Alternate gene names: 146337664
Gene position: 542523-539728 (Counterclockwise)
Preceding gene: 146337671
Following gene: 146337663
Centisome position: 7.28
GC content: 66.81
Gene sequence:
>2796_bases ATGGACAGCGTCGCCACAGATTCCAAAGCCTTCACTTCAGCCGATTTCGACAGCGCCGGCATTGCCGCGGCTGTCGATGC GCTGGCCAAGCAGCACTCCGGCCGCGAGGACATGTTCCGCGCCGCCGTCGTCCAGTTCCTCAAGGCCGAGCTGGTGAAGG CGCGCGCCGCCGCCCAGGCGCAGCTGCTTCAGGACCGCCACGGCCGGCATTGCGCCGAGCGGCTCTGCGTCGTGCAGGAC GAGATCATCCGCATTCTCTATGCGGCGGCCACCGAGCACCTCTATCGCTCGGACGTGCCGAGCGGCGCCGAGCGGATGGC TGTCGTCGCGACCGGCGGCTATGGCCGCGGGCTGATGGCGCCGGAGTCCGACATCGATCTGCTGTTCATCCTGCCCTACA AGCAGACCGCCTGGGGCGAGCAGGTTGCCGAGGCCATCCTGTATTCGCTGTGGGACATGGGGCTGAAGGTCGGCCACGCC ACCCGTTCGGTCGATGAATCGATCCGCCAGGCGCGCGGCGACATGACCATCCGCACGGCGATCCTGGAGACGCGCTATCT CGCCGGCGACAAGCCGCTCTATGACGAGCTGGTGCAGCGCTTCGACACCGAGGTGGTGCAGGGCACGGCCGCCGAGTTCG TCGCCGCCAAGCTCGCCGAGCGCGAGGAGCGGCATCGACGCGGCGGCCAGTCGCGCTACCTGGTCGAGCCCAACGTCAAG GACGGCAAGGGCGGCCTGCGCGACCTGCACACGCTGTTCTGGATCGCCAAATACGTCTACCGCGTGCGCGAGACCGCCGA GCTGGTCGAGCGCGGCGTGTTCGACGCGCATGAATACCGCACCTTCCGGCGCTGTTCCGATTTCCTGTGGTCGGTTCGCT GCAATCTGCACTTCGTCAGCGGCCGCCCCGAGGAGCGGCTGTCATTCGACCTGCAGCGCGAGATCGCGGTCCGGCTGGGC TACACCAGCCACCCGGGCATGCAGGATGTCGAGCGGTTCATGAAGCACTACTTCCTGGTCGCCAAGCAGGTCGGCAACCT CACTGCCATCCTGTGCGCCAAGCTCGAGGACCAGCAGGCCAAGGCTGCGCCGGTGCTGAGCCGGATGATCTCGCGCCTGA CCACCGGCTCGACCTGGCGGCGCGTGCCCGAGAGCGACGACTTCATCGTCGACAACAACCGCATCAACCTCGCCGCGCCC GACGTCTTCAAGCACGACCCGGTCAATCTGATCCGCATCTTCCGCCTCGCGCAGAAGAACAACCTCGCCTTCCATCCCGA CGCGATGCGCGCGGTGACGCGCTCGCTCAACATGATCAACGCCGAGCTGCGCGAGAATCCCGAGGCCAACCGGCTGTTCA TGGAGATCCTGACCTCCAACGACGCCGAGACCGTGCTGCGGCGGATGAACGAGACCGGCGTGCTCGGCCATTTCATCAGC GCCTTCGGCCGCATCGTCTCGATGATGCAGTTCAACATGTATCATCACTACACGGTCGACGAGCATCTGATCCGCTGTAT CGGCTTCCTGCAGGAGATCGAGCGCGGCGGCCATGACGAGTTCGTGCTCGCCTCGGATTTGATGCGCAAGATCCGGCCCG AGCACCGCGCCGTCATCTACATCACCGTGCTGCTGCACGACGTCGCCAAGGGCCGGCCGGAGGATCATTCGGTCGCCGGC GCCAAGATCGCGCGGCGCCTGTGCCCGCGGCTCGGCTTCAACAATGCCGACACGGAGCTCGTCGCCTGGCTGATCGAGGA GCACCTGACGATGTCGACGGTGGCGCAGTCACGCGACCTGTCGGACCGCCGGACCATCGAGAAGTTCGCCGCCGTGGTGC AATCGGTCGAGCAGATGAAGCTGCTGACCATCCTGACCACCGCCGACATCCGCGGCGTCGGTCCCGGCGTCTGGAACGGC TGGAAGGCGCAGCTCCTGCGCACGCTGTACTACGAGACCGAGCCGGTGCTGACCGGCGGCTTCTCCGAGGTCAACCGCGC CAAGCGCATCACCGCGGCGCAGGCCGAATTCCGCAACGCCTTCACCGACTGGCCGGAGGACGAGCTCAACACCTATATCG GCCGGCACTACCCGGCCTATTGGCTCAAGGTCGAGCTGCCGCGCAAGATCCGCCACGCCCGCTTCGTGCGGTCGAGCGAG GACGCCGGCCACAAGCTCGCGATCAATGTCGGCTTCGATCCGGCGCGCGGCGTGACCGAACTCACGATCTTCGCGATGGA CCATCCGTGGCTGCTGTCGATCATCGCCGGCGCCTGCGCCTCGGCCGGCGCCAACATCGTCGACGCCCAGATCTACACCA CCACCGACGGCCGCGCGCTCGATACCATCGCGATTTCCCGGGAGTATGAGCGCGACGAGGACGAGGGGCGGCGCGCGACG CGGATCGGCGAGACGATCGAACAGGTGCTGGAGGGCAAGCTGCGGCTGCCGGACGCCGTGGCGCGACGGACGACGCGCGG CAAGCAGCACAAGGCGTTCTCGGTCGAGCCGGAAGTCTCGATCAACAATCAATGGTCGGAGCTCTACACCGTCATCGAGG TCTCCGGCCTGGACCGCCCCGGCCTGTTGTATGAGCTGACGACGGCGATCTCGAAGCTGAACCTGAACATCGCCTCGGCG CATGTGGCGACGTTCGGCGAGCGCGCCCGCGACGTGTTCTACGTCACCGACCTCCTGGGCGCGCAGATCAATGCGCCGAC CCGGCAGGCCGCGATCAAGAGTGCGCTGCTGCATCTCTTGGCGAGCGAGGACGCCGCGGCGCAGCCGGCGGCGTAA
Upstream 100 bases:
>100_bases GCACGATCATCATCCGTCCCGCGCCGGTGACAGCATGGATCGATTGCTGCATTGGAAGTTTCGTGACAGCACGTGCCTTG TTCGATATCCGGTTGCATCC
Downstream 100 bases:
>100_bases AGATATAGCGTGTGAGGATATGGGAGTGTCGGGGTGAGCCGTTGCGGCTCCTCGGCAGAACTTGATTGAGGAGACCCGGC AACGTCGCCGGACTCGAACG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MDSVATDSKAFTSADFDSAGIAAAVDALAKQHSGREDMFRAAVVQFLKAELVKARAAAQAQLLQDRHGRHCAERLCVVQD EIIRILYAAATEHLYRSDVPSGAERMAVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEAILYSLWDMGLKVGHA TRSVDESIRQARGDMTIRTAILETRYLAGDKPLYDELVQRFDTEVVQGTAAEFVAAKLAEREERHRRGGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVRETAELVERGVFDAHEYRTFRRCSDFLWSVRCNLHFVSGRPEERLSFDLQREIAVRLG YTSHPGMQDVERFMKHYFLVAKQVGNLTAILCAKLEDQQAKAAPVLSRMISRLTTGSTWRRVPESDDFIVDNNRINLAAP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRAVTRSLNMINAELRENPEANRLFMEILTSNDAETVLRRMNETGVLGHFIS AFGRIVSMMQFNMYHHYTVDEHLIRCIGFLQEIERGGHDEFVLASDLMRKIRPEHRAVIYITVLLHDVAKGRPEDHSVAG AKIARRLCPRLGFNNADTELVAWLIEEHLTMSTVAQSRDLSDRRTIEKFAAVVQSVEQMKLLTILTTADIRGVGPGVWNG WKAQLLRTLYYETEPVLTGGFSEVNRAKRITAAQAEFRNAFTDWPEDELNTYIGRHYPAYWLKVELPRKIRHARFVRSSE DAGHKLAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEGRRAT RIGETIEQVLEGKLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASA HVATFGERARDVFYVTDLLGAQINAPTRQAAIKSALLHLLASEDAAAQPAA
Sequences:
>Translated_931_residues MDSVATDSKAFTSADFDSAGIAAAVDALAKQHSGREDMFRAAVVQFLKAELVKARAAAQAQLLQDRHGRHCAERLCVVQD EIIRILYAAATEHLYRSDVPSGAERMAVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEAILYSLWDMGLKVGHA TRSVDESIRQARGDMTIRTAILETRYLAGDKPLYDELVQRFDTEVVQGTAAEFVAAKLAEREERHRRGGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVRETAELVERGVFDAHEYRTFRRCSDFLWSVRCNLHFVSGRPEERLSFDLQREIAVRLG YTSHPGMQDVERFMKHYFLVAKQVGNLTAILCAKLEDQQAKAAPVLSRMISRLTTGSTWRRVPESDDFIVDNNRINLAAP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRAVTRSLNMINAELRENPEANRLFMEILTSNDAETVLRRMNETGVLGHFIS AFGRIVSMMQFNMYHHYTVDEHLIRCIGFLQEIERGGHDEFVLASDLMRKIRPEHRAVIYITVLLHDVAKGRPEDHSVAG AKIARRLCPRLGFNNADTELVAWLIEEHLTMSTVAQSRDLSDRRTIEKFAAVVQSVEQMKLLTILTTADIRGVGPGVWNG WKAQLLRTLYYETEPVLTGGFSEVNRAKRITAAQAEFRNAFTDWPEDELNTYIGRHYPAYWLKVELPRKIRHARFVRSSE DAGHKLAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEGRRAT RIGETIEQVLEGKLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASA HVATFGERARDVFYVTDLLGAQINAPTRQAAIKSALLHLLASEDAAAQPAA >Mature_931_residues MDSVATDSKAFTSADFDSAGIAAAVDALAKQHSGREDMFRAAVVQFLKAELVKARAAAQAQLLQDRHGRHCAERLCVVQD EIIRILYAAATEHLYRSDVPSGAERMAVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEAILYSLWDMGLKVGHA TRSVDESIRQARGDMTIRTAILETRYLAGDKPLYDELVQRFDTEVVQGTAAEFVAAKLAEREERHRRGGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVRETAELVERGVFDAHEYRTFRRCSDFLWSVRCNLHFVSGRPEERLSFDLQREIAVRLG YTSHPGMQDVERFMKHYFLVAKQVGNLTAILCAKLEDQQAKAAPVLSRMISRLTTGSTWRRVPESDDFIVDNNRINLAAP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRAVTRSLNMINAELRENPEANRLFMEILTSNDAETVLRRMNETGVLGHFIS AFGRIVSMMQFNMYHHYTVDEHLIRCIGFLQEIERGGHDEFVLASDLMRKIRPEHRAVIYITVLLHDVAKGRPEDHSVAG AKIARRLCPRLGFNNADTELVAWLIEEHLTMSTVAQSRDLSDRRTIEKFAAVVQSVEQMKLLTILTTADIRGVGPGVWNG WKAQLLRTLYYETEPVLTGGFSEVNRAKRITAAQAEFRNAFTDWPEDELNTYIGRHYPAYWLKVELPRKIRHARFVRSSE DAGHKLAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEGRRAT RIGETIEQVLEGKLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASA HVATFGERARDVFYVTDLLGAQINAPTRQAAIKSALLHLLASEDAAAQPAA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=804, Percent_Identity=32.4626865671642, Blast_Score=374, Evalue=1e-104,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 104698; Mature: 104698
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSVATDSKAFTSADFDSAGIAAAVDALAKQHSGREDMFRAAVVQFLKAELVKARAAAQA CCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QLLQDRHGRHCAERLCVVQDEIIRILYAAATEHLYRSDVPSGAERMAVVATGGYGRGLMA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC PESDIDLLFILPYKQTAWGEQVAEAILYSLWDMGLKVGHATRSVDESIRQARGDMTIRTA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ILETRYLAGDKPLYDELVQRFDTEVVQGTAAEFVAAKLAEREERHRRGGQSRYLVEPNVK HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC DGKGGLRDLHTLFWIAKYVYRVRETAELVERGVFDAHEYRTFRRCSDFLWSVRCNLHFVS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEEEC GRPEERLSFDLQREIAVRLGYTSHPGMQDVERFMKHYFLVAKQVGNLTAILCAKLEDQQA CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH KAAPVLSRMISRLTTGSTWRRVPESDDFIVDNNRINLAAPDVFKHDPVNLIRIFRLAQKN HHHHHHHHHHHHHCCCCHHCCCCCCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCC NLAFHPDAMRAVTRSLNMINAELRENPEANRLFMEILTSNDAETVLRRMNETGVLGHFIS CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH AFGRIVSMMQFNMYHHYTVDEHLIRCIGFLQEIERGGHDEFVLASDLMRKIRPEHRAVIY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEE ITVLLHDVAKGRPEDHSVAGAKIARRLCPRLGFNNADTELVAWLIEEHLTMSTVAQSRDL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SDRRTIEKFAAVVQSVEQMKLLTILTTADIRGVGPGVWNGWKAQLLRTLYYETEPVLTGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC FSEVNRAKRITAAQAEFRNAFTDWPEDELNTYIGRHYPAYWLKVELPRKIRHARFVRSSE HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCC DAGHKLAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRAL CCCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE DTIAISREYERDEDEGRRATRIGETIEQVLEGKLRLPDAVARRTTRGKQHKAFSVEPEVS HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEECCCCCC INNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLG CCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC AQINAPTRQAAIKSALLHLLASEDAAAQPAA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MDSVATDSKAFTSADFDSAGIAAAVDALAKQHSGREDMFRAAVVQFLKAELVKARAAAQA CCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QLLQDRHGRHCAERLCVVQDEIIRILYAAATEHLYRSDVPSGAERMAVVATGGYGRGLMA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC PESDIDLLFILPYKQTAWGEQVAEAILYSLWDMGLKVGHATRSVDESIRQARGDMTIRTA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ILETRYLAGDKPLYDELVQRFDTEVVQGTAAEFVAAKLAEREERHRRGGQSRYLVEPNVK HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC DGKGGLRDLHTLFWIAKYVYRVRETAELVERGVFDAHEYRTFRRCSDFLWSVRCNLHFVS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEEEC GRPEERLSFDLQREIAVRLGYTSHPGMQDVERFMKHYFLVAKQVGNLTAILCAKLEDQQA CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH KAAPVLSRMISRLTTGSTWRRVPESDDFIVDNNRINLAAPDVFKHDPVNLIRIFRLAQKN HHHHHHHHHHHHHCCCCHHCCCCCCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCC NLAFHPDAMRAVTRSLNMINAELRENPEANRLFMEILTSNDAETVLRRMNETGVLGHFIS CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH AFGRIVSMMQFNMYHHYTVDEHLIRCIGFLQEIERGGHDEFVLASDLMRKIRPEHRAVIY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEE ITVLLHDVAKGRPEDHSVAGAKIARRLCPRLGFNNADTELVAWLIEEHLTMSTVAQSRDL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SDRRTIEKFAAVVQSVEQMKLLTILTTADIRGVGPGVWNGWKAQLLRTLYYETEPVLTGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC FSEVNRAKRITAAQAEFRNAFTDWPEDELNTYIGRHYPAYWLKVELPRKIRHARFVRSSE HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCC DAGHKLAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRAL CCCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE DTIAISREYERDEDEGRRATRIGETIEQVLEGKLRLPDAVARRTTRGKQHKAFSVEPEVS HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEECCCCCC INNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLG CCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC AQINAPTRQAAIKSALLHLLASEDAAAQPAA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA