| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is limB [H]
Identifier: 146337642
GI number: 146337642
Start: 512329
End: 513567
Strand: Reverse
Name: limB [H]
Synonym: BRADO0508
Alternate gene names: 146337642
Gene position: 513567-512329 (Counterclockwise)
Preceding gene: 146337644
Following gene: 146337640
Centisome position: 6.89
GC content: 66.83
Gene sequence:
>1239_bases ATGGCGCGGCTCAAGTTCGGCGCATTCCTCGCTCCGCATCATCCGATCGGCGAGCATCCGATGCTGCAATTCCGTCGCGA CCTCGATCTGGTCTCGCAGCTCGACGAGCTCGGCTATGACGAGTTCTGGTGCGGCGAGCATCATTCGAGCGGCTGGGAGA TGATCGCCTCGCCCGAGATGTTCCTCGCCGCCGCCGGCGAGCGCACCAAGCGCATCCGGCTCGGCACCGGCGTCATCTCG CTGCCGTACCATCATCCCTTCAACGTCGCGCAGCGCATGGTGCAGCTCGACCACATGACCGGCGGCCGCGCCATCTTCGG CTCCGGCCCCGGCGCGCTCGCCTCGGATGCGCACACACTCGGCATCGACCCGATGACGCAGCGCGACCGCCAGGACGAGG CGATCGCCATCATCCGCCGGCTGTTCAACGGCGAGCGCGTCACCGCCAAGAGCGACTGGTTCACGATGAACGACGCCGCG CTGCAGATCCTGCCGCTGCAGGAGGACATGCCGTTCGTCGTGGCGTCGCAGATCTCACCGTCGGGCATGACGCTCGCCGG CAAATACGGCATCGGCATCATCTCGCTCGGCTCGATGTCGACGCAGGGCTTGATGGCGCTGCCTCAGCAATGGGAGTTCG CCGAGGACGCCGCGAAGAAGCACGGCACCACGGTGAGCCGCGCCAATTGGCGCGTGCTATTGTCCTGGCACATCGCCGAG ACGCGCGAGCAGGCGCGGCGCGAGGCCGGTGCCGGGCTGATGCGCTGGCACAACGAGTACAATGTCGGCACCTTGATGCG GCCGGGCCTCAAGACCTTCGCCTCGCCCGACGAAGCCGTCGACAAGACCGCCTTCGTCGAAGGCGCGGCTTCGACGATCG GCACGCCTGACGATCTCGTCAAGACGATCAAGAATCTGATGCAGGTGTCCGGCGGCGTCGGCGCCATCATCGGCTTCGTG CACGACTGGGCCAATCCGGAGAATACGCGGCGCAGCTGGGACATGGTCGCGCGCTACGTCGTGCCGGAGATCAACGGCTA TATCGACGGCCTGCGCCGCTCGCAGAAATTCGTCATCGAGAACCGCGCCATCTTCGAGCGCGCGGGGCAGGCGGTGATGG CCAAGATCATGGACAACGACAAGGCGGCTGCGGCGCTGTCGCAGACGGGCCCGGGACGGATCGCGATCCCCGCGGTCAAT GCGCCGGACCTGCAGGAGGCGGCGAAGCGCCGACGATGA
Upstream 100 bases:
>100_bases ATGCACTGCTCGCGAATGACAGCAAGATGATTGCCTGCGCACGGCGCGCCAATTAGCCTCAACACCAAGCAACGATGATA TTCCATTCGGGAGAAAACAG
Downstream 100 bases:
>100_bases ACGAATAACGTAGGGCGGATCAGCGCAGCGTAATCCGCCGCGTCTCCGCAAACGAGATCCGGTTGTCTTGGCTACAGGGC CGGGACCGCATGAGCCAATC
Product: putative alkanal monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MARLKFGAFLAPHHPIGEHPMLQFRRDLDLVSQLDELGYDEFWCGEHHSSGWEMIASPEMFLAAAGERTKRIRLGTGVIS LPYHHPFNVAQRMVQLDHMTGGRAIFGSGPGALASDAHTLGIDPMTQRDRQDEAIAIIRRLFNGERVTAKSDWFTMNDAA LQILPLQEDMPFVVASQISPSGMTLAGKYGIGIISLGSMSTQGLMALPQQWEFAEDAAKKHGTTVSRANWRVLLSWHIAE TREQARREAGAGLMRWHNEYNVGTLMRPGLKTFASPDEAVDKTAFVEGAASTIGTPDDLVKTIKNLMQVSGGVGAIIGFV HDWANPENTRRSWDMVARYVVPEINGYIDGLRRSQKFVIENRAIFERAGQAVMAKIMDNDKAAAALSQTGPGRIAIPAVN APDLQEAAKRRR
Sequences:
>Translated_412_residues MARLKFGAFLAPHHPIGEHPMLQFRRDLDLVSQLDELGYDEFWCGEHHSSGWEMIASPEMFLAAAGERTKRIRLGTGVIS LPYHHPFNVAQRMVQLDHMTGGRAIFGSGPGALASDAHTLGIDPMTQRDRQDEAIAIIRRLFNGERVTAKSDWFTMNDAA LQILPLQEDMPFVVASQISPSGMTLAGKYGIGIISLGSMSTQGLMALPQQWEFAEDAAKKHGTTVSRANWRVLLSWHIAE TREQARREAGAGLMRWHNEYNVGTLMRPGLKTFASPDEAVDKTAFVEGAASTIGTPDDLVKTIKNLMQVSGGVGAIIGFV HDWANPENTRRSWDMVARYVVPEINGYIDGLRRSQKFVIENRAIFERAGQAVMAKIMDNDKAAAALSQTGPGRIAIPAVN APDLQEAAKRRR >Mature_411_residues ARLKFGAFLAPHHPIGEHPMLQFRRDLDLVSQLDELGYDEFWCGEHHSSGWEMIASPEMFLAAAGERTKRIRLGTGVISL PYHHPFNVAQRMVQLDHMTGGRAIFGSGPGALASDAHTLGIDPMTQRDRQDEAIAIIRRLFNGERVTAKSDWFTMNDAAL QILPLQEDMPFVVASQISPSGMTLAGKYGIGIISLGSMSTQGLMALPQQWEFAEDAAKKHGTTVSRANWRVLLSWHIAET REQARREAGAGLMRWHNEYNVGTLMRPGLKTFASPDEAVDKTAFVEGAASTIGTPDDLVKTIKNLMQVSGGVGAIIGFVH DWANPENTRRSWDMVARYVVPEINGYIDGLRRSQKFVIENRAIFERAGQAVMAKIMDNDKAAAALSQTGPGRIAIPAVNA PDLQEAAKRRR
Specific function: Acts on both enantiomers of limonene by their NAD- dependent epoxidation at the 1,2 double bond forming limonene-1,2- epoxide [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial luciferase oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: =1.14.13.107 [H]
Molecular weight: Translated: 45423; Mature: 45292
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLKFGAFLAPHHPIGEHPMLQFRRDLDLVSQLDELGYDEFWCGEHHSSGWEMIASPEM CCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEECCCCE FLAAAGERTKRIRLGTGVISLPYHHPFNVAQRMVQLDHMTGGRAIFGSGPGALASDAHTL EEEECCCCCCEEEECCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC GIDPMTQRDRQDEAIAIIRRLFNGERVTAKSDWFTMNDAALQILPLQEDMPFVVASQISP CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCEEECCCEEEEEECCCCCCEEEEECCCC SGMTLAGKYGIGIISLGSMSTQGLMALPQQWEFAEDAAKKHGTTVSRANWRVLLSWHIAE CCCEEEECCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHCCCEEECCCEEEEEEEHHHH TREQARREAGAGLMRWHNEYNVGTLMRPGLKTFASPDEAVDKTAFVEGAASTIGTPDDLV HHHHHHHHHCCHHHHHCCCCCCCCEECCCHHHHCCCHHHHHHHHHHCCHHHCCCCHHHHH KTIKNLMQVSGGVGAIIGFVHDWANPENTRRSWDMVARYVVPEINGYIDGLRRSQKFVIE HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NRAIFERAGQAVMAKIMDNDKAAAALSQTGPGRIAIPAVNAPDLQEAAKRRR HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC >Mature Secondary Structure ARLKFGAFLAPHHPIGEHPMLQFRRDLDLVSQLDELGYDEFWCGEHHSSGWEMIASPEM CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEECCCCE FLAAAGERTKRIRLGTGVISLPYHHPFNVAQRMVQLDHMTGGRAIFGSGPGALASDAHTL EEEECCCCCCEEEECCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC GIDPMTQRDRQDEAIAIIRRLFNGERVTAKSDWFTMNDAALQILPLQEDMPFVVASQISP CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCEEECCCEEEEEECCCCCCEEEEECCCC SGMTLAGKYGIGIISLGSMSTQGLMALPQQWEFAEDAAKKHGTTVSRANWRVLLSWHIAE CCCEEEECCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHCCCEEECCCEEEEEEEHHHH TREQARREAGAGLMRWHNEYNVGTLMRPGLKTFASPDEAVDKTAFVEGAASTIGTPDDLV HHHHHHHHHCCHHHHHCCCCCCCCEECCCHHHHCCCHHHHHHHHHHCCHHHCCCCHHHHH KTIKNLMQVSGGVGAIIGFVHDWANPENTRRSWDMVARYVVPEINGYIDGLRRSQKFVIE HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NRAIFERAGQAVMAKIMDNDKAAAALSQTGPGRIAIPAVNAPDLQEAAKRRR HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA