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The map label for this gene is rimM

Identifier: 146337523

GI number: 146337523

Start: 382458

End: 383057

Strand: Reverse

Name: rimM

Synonym: BRADO0377

Alternate gene names: 146337523

Gene position: 383057-382458 (Counterclockwise)

Preceding gene: 146337524

Following gene: 146337522

Centisome position: 5.14

GC content: 67.67

Gene sequence:

>600_bases
GTGATGTCCAAGCTGATCTGCGTCGCCAGGATCGGCGCCGCGCACGGCGTGCGCGGCGAGGTTCGGCTGTGGACCTTCAC
CGAGGACCCGCTGGCCGTGCTGCATTACGGCCCGCTGACGACCAAGGACGGCAGCCGCTCGTTCGAGGTCACCAAGGCGC
GCGAGGCCAAGGATCATCTCGTCGCGAGCTTCAAGGGCATTACCGACCGCAACGCGGCCGAACGCCTCAACGGCGTCGAG
CTCTACGTGCCGCGCGACCGCCTGCCCGAGACCGACGACGATGAATACTACCACGCCGACCTGATCGGCCTGGCCGCCGA
GACCACGGCCGGCGCCCCGCTCGGCCGCGTGCTCGCCATCCATAATTTCGGCGCCGGCGACATCATCGAGATCGCTCCGC
CCTCCGGCAGCACCCTGATGCTGCCGTTCACCAATGCCGTGGTGCCGACGGTGGACCTCGCGGGCGGGCGGGTCATCATC
GAGCTGCCTGATGAGATTGACGGCGAGGATCGAGCTTCGGCCGATGAATCGGCGTCGGCTGAGGACGATGCTGCCGCCCC
AAACTCAGCTCGTCATCCCCGCGAAAGCGGGGATCCATAG

Upstream 100 bases:

>100_bases
GCTTCGAGACGTGCGGCTTTGGCCGTGCTCCTCGGCATGAGGACTTGGCTCCTCGTCCTGAGGAGCGCGCCGTTGCGCGC
GTCTCGAAGGACGAGGCCTC

Downstream 100 bases:

>100_bases
CCACCGCAGCCGATTGGCTTGCGCGGAACTGGCAGCGTGTCACTTTCCAACATCACGCGGTATGGGTCCCGGATCGGCGC
GGCGACGCGCTGATGCGCGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MMSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHLVASFKGITDRNAAERLNGVE
LYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVII
ELPDEIDGEDRASADESASAEDDAAAPNSARHPRESGDP

Sequences:

>Translated_199_residues
MMSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHLVASFKGITDRNAAERLNGVE
LYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVII
ELPDEIDGEDRASADESASAEDDAAAPNSARHPRESGDP
>Mature_199_residues
MMSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHLVASFKGITDRNAAERLNGVE
LYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVII
ELPDEIDGEDRASADESASAEDDAAAPNSARHPRESGDP

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=158, Percent_Identity=27.8481012658228, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BRASO (A4YK99)

Other databases:

- EMBL:   CU234118
- RefSeq:   YP_001202571.1
- ProteinModelPortal:   A4YK99
- SMR:   A4YK99
- STRING:   A4YK99
- GeneID:   5117869
- GenomeReviews:   CU234118_GR
- KEGG:   bra:BRADO0377
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK13828
- BioCyc:   BSP376:BRADO0377-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21228; Mature: 21228

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHL
CCCCEEEEEHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHH
VASFKGITDRNAAERLNGVELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAI
HHHHCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEE
HNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIELPDEIDGEDRASADESASA
EECCCCCEEEEECCCCCEEEEEECCCEECEEEECCCEEEEECCCCCCCCCCCCCCCCCCC
EDDAAAPNSARHPRESGDP
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHL
CCCCEEEEEHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHH
VASFKGITDRNAAERLNGVELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAI
HHHHCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEE
HNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIELPDEIDGEDRASADESASA
EECCCCCEEEEECCCCCEEEEEECCCEECEEEECCCEEEEECCCCCCCCCCCCCCCCCCC
EDDAAAPNSARHPRESGDP
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA