Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is ydjH [C]
Identifier: 146337205
GI number: 146337205
Start: 36744
End: 37745
Strand: Reverse
Name: ydjH [C]
Synonym: BRADO0031
Alternate gene names: 146337205
Gene position: 37745-36744 (Counterclockwise)
Preceding gene: 146337210
Following gene: 146337203
Centisome position: 0.51
GC content: 65.37
Gene sequence:
>1002_bases ATGACTGACGCGAAATACGATGTTCTCGGGATCGGCAACGCGATTTTCGACGTGCTGGTGCAGGCCGATGAGGCCTTCCT CGCCAAGCACGGCATGACCAAAGGCGGCATGGCGCTGATCGACGAGGCGCGTGCGGCGGCGATTTATGCGGATATGGGCC CGGCGACCGAGATGTCGGGCGGCTCCGGGGCCAATACCATCGTCGGCCTGGCCAGCCTCGGCGCGCGTGCTGCCTATGTG GGCAAGGTCAAGGGCGACCAGATCGGCAAAATGTACACCCACGACATCCGTGCGGCCGGCGTCGCCTTCGAGACGGCGCC CGCGACCGACGGCCCGGCCACAGGCTGCTCCTACATCATCGTCACGCCGGACGGCGAGCGCACCATGAATACCTATCTCG GCGCGGCGCAGAACCTCACGGTCGCCGACATCGATCCCGCGCAGATTGCGGCGGCGCGCATCGTCTATCTTGAGGGTTAT TTGTGGGATCCCAAGGACGCCAAGGATGCGTTTGTGAAGGCGGCGACGATCGCGCATGATGCGGGACGCGAGGTCGCGCT GACCTTGTCGGATGCGTTCTGCGTCGACCGCTATCGCGAGGAGTTCCTTGACCTGATGCGCGGCGGCACCGTCGATCTCG TGTTTGCCAACGAGGCTGAGCTGCATTCGTTGTACCAGACCTCAGATTTTGACGGCGCGCTGAAGCAGCTGCGTGAGGAC GCCACGCTCGGCATCGTCACGCGCAGCGACAAGGGCTGCGTCGTGGTCTCGAACGACGGCGTGATCGCGGTGCCGGCGCA TCCGATCAAGACGCTGGTCGATACCACCGGCGCCGGTGATCTATTTGCCGCGGGCTTCCTGTTCGGCCTGGTGCGCAAGA CCGGCTACGAGATCGCCGGCAAGCTCGGCGGCCTGGCCGCGGCCGAGGTGATCCAGCACATCGGCGCACGGCCGCAGGTG TCGCTGAAGGAGCTGGCCGCGCAGAACCGGCTGAAGGTGTAG
Upstream 100 bases:
>100_bases TGACAACACGGTCACGAATGATCGGATCATGAGGCTTCTATAGCAGCGCCGCTTGTGATAGGCCGCAGCGTTTGCAAAAC GCCGTAAACGGGGCCAGTGA
Downstream 100 bases:
>100_bases TCAGAGCCGAGGACTGCGTCAGACTAACTGATCCAGCTCGCTCGGTGCCTCTTACCTCGCCCCGCTTGCGGGGAGAGGTC GGATCGCATCGTCAGATGCG
Product: adenosine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MTDAKYDVLGIGNAIFDVLVQADEAFLAKHGMTKGGMALIDEARAAAIYADMGPATEMSGGSGANTIVGLASLGARAAYV GKVKGDQIGKMYTHDIRAAGVAFETAPATDGPATGCSYIIVTPDGERTMNTYLGAAQNLTVADIDPAQIAAARIVYLEGY LWDPKDAKDAFVKAATIAHDAGREVALTLSDAFCVDRYREEFLDLMRGGTVDLVFANEAELHSLYQTSDFDGALKQLRED ATLGIVTRSDKGCVVVSNDGVIAVPAHPIKTLVDTTGAGDLFAAGFLFGLVRKTGYEIAGKLGGLAAAEVIQHIGARPQV SLKELAAQNRLKV
Sequences:
>Translated_333_residues MTDAKYDVLGIGNAIFDVLVQADEAFLAKHGMTKGGMALIDEARAAAIYADMGPATEMSGGSGANTIVGLASLGARAAYV GKVKGDQIGKMYTHDIRAAGVAFETAPATDGPATGCSYIIVTPDGERTMNTYLGAAQNLTVADIDPAQIAAARIVYLEGY LWDPKDAKDAFVKAATIAHDAGREVALTLSDAFCVDRYREEFLDLMRGGTVDLVFANEAELHSLYQTSDFDGALKQLRED ATLGIVTRSDKGCVVVSNDGVIAVPAHPIKTLVDTTGAGDLFAAGFLFGLVRKTGYEIAGKLGGLAAAEVIQHIGARPQV SLKELAAQNRLKV >Mature_332_residues TDAKYDVLGIGNAIFDVLVQADEAFLAKHGMTKGGMALIDEARAAAIYADMGPATEMSGGSGANTIVGLASLGARAAYVG KVKGDQIGKMYTHDIRAAGVAFETAPATDGPATGCSYIIVTPDGERTMNTYLGAAQNLTVADIDPAQIAAARIVYLEGYL WDPKDAKDAFVKAATIAHDAGREVALTLSDAFCVDRYREEFLDLMRGGTVDLVFANEAELHSLYQTSDFDGALKQLREDA TLGIVTRSDKGCVVVSNDGVIAVPAHPIKTLVDTTGAGDLFAAGFLFGLVRKTGYEIAGKLGGLAAAEVIQHIGARPQVS LKELAAQNRLKV
Specific function: Unknown
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Homo sapiens, GI5670342, Length=262, Percent_Identity=24.8091603053435, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI11545855, Length=250, Percent_Identity=29.6, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI87081971, Length=277, Percent_Identity=25.6317689530686, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541820, Length=333, Percent_Identity=23.4234234234234, Blast_Score=75, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322565, Length=327, Percent_Identity=27.217125382263, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI28571668, Length=344, Percent_Identity=23.2558139534884, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI24663633, Length=333, Percent_Identity=24.024024024024, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI21356339, Length=333, Percent_Identity=24.024024024024, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355521, Length=343, Percent_Identity=23.9067055393586, Blast_Score=72, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: NA
Molecular weight: Translated: 34904; Mature: 34773
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAKYDVLGIGNAIFDVLVQADEAFLAKHGMTKGGMALIDEARAAAIYADMGPATEMSG CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEECCCCCCCCCC GSGANTIVGLASLGARAAYVGKVKGDQIGKMYTHDIRAAGVAFETAPATDGPATGCSYII CCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCEEEECCCCCCCCCCCCEEEE VTPDGERTMNTYLGAAQNLTVADIDPAQIAAARIVYLEGYLWDPKDAKDAFVKAATIAHD ECCCCCHHHHHHHCCCCCCEEECCCHHHHHHEEEEEEECEEECCCCHHHHHHHHHHHHHC AGREVALTLSDAFCVDRYREEFLDLMRGGTVDLVFANEAELHSLYQTSDFDGALKQLRED CCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHCC ATLGIVTRSDKGCVVVSNDGVIAVPAHPIKTLVDTTGAGDLFAAGFLFGLVRKTGYEIAG CEEEEEEECCCCEEEEECCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHH KLGGLAAAEVIQHIGARPQVSLKELAAQNRLKV HHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure TDAKYDVLGIGNAIFDVLVQADEAFLAKHGMTKGGMALIDEARAAAIYADMGPATEMSG CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEECCCCCCCCCC GSGANTIVGLASLGARAAYVGKVKGDQIGKMYTHDIRAAGVAFETAPATDGPATGCSYII CCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCEEEECCCCCCCCCCCCEEEE VTPDGERTMNTYLGAAQNLTVADIDPAQIAAARIVYLEGYLWDPKDAKDAFVKAATIAHD ECCCCCHHHHHHHCCCCCCEEECCCHHHHHHEEEEEEECEEECCCCHHHHHHHHHHHHHC AGREVALTLSDAFCVDRYREEFLDLMRGGTVDLVFANEAELHSLYQTSDFDGALKQLRED CCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHCC ATLGIVTRSDKGCVVVSNDGVIAVPAHPIKTLVDTTGAGDLFAAGFLFGLVRKTGYEIAG CEEEEEEECCCCEEEEECCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHH KLGGLAAAEVIQHIGARPQVSLKELAAQNRLKV HHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]