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The map label for this gene is ybaO [H]

Identifier: 146301576

GI number: 146301576

Start: 4547105

End: 4547557

Strand: Reverse

Name: ybaO [H]

Synonym: Fjoh_3837

Alternate gene names: 146301576

Gene position: 4547557-4547105 (Counterclockwise)

Preceding gene: 146301578

Following gene: 146301573

Centisome position: 74.59

GC content: 30.91

Gene sequence:

>453_bases
ATGGAGCAGATAGACGATGTTGATCTTCAATTACTAAATATACTTCACGATAATTCTAAATATACTGTGAAAGAACTGGC
CAAAATGGTAAATCTTTCGGCATCACCTGTTTTTGAGCGTATTAAAAGATTAGAAAACAACGGTTATATTAAGAAATATA
TAGCTCTGCTGGATGCAGAAAAACTAAACAGGGGATTTATCGTTTTCTGTAATATCAAACTTAAACAGCACGATCGTAAT
ATTGGGAATCAGTTTGTTAGTGATATTATGAAAATAGAAGAAATTGTAGAATGTTACAATATCTCAGGAGATTACGATTT
TTTAATGAAAGTTTCTGCCAAAGATATGAAGCATTATCAGGATTTTGTATTTAACAAATTAGGCTCAGTTGAAAGTATAG
GGAGTACCCAAAGTACCTTTGTTATGTCAGAAATAAAAAATATGTATGGATAG

Upstream 100 bases:

>100_bases
GGTTTTATTAAAATAAGGTTTTTATGTTGTTTTTTGTTACATTTGAAGATTATTATTCTTTTTTGTAAATTAATTTAACC
TTTTTTAAGTAAAATATTCT

Downstream 100 bases:

>100_bases
TCCTGTGATGGTTTATTGGTTTGAAATTGGTAAAGTTTTTTTATCTGCTTAAATTTTTCCTCAACTAAGACTTTCATTTC
ATCAAAGTCCTGCTTTTTCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MEQIDDVDLQLLNILHDNSKYTVKELAKMVNLSASPVFERIKRLENNGYIKKYIALLDAEKLNRGFIVFCNIKLKQHDRN
IGNQFVSDIMKIEEIVECYNISGDYDFLMKVSAKDMKHYQDFVFNKLGSVESIGSTQSTFVMSEIKNMYG

Sequences:

>Translated_150_residues
MEQIDDVDLQLLNILHDNSKYTVKELAKMVNLSASPVFERIKRLENNGYIKKYIALLDAEKLNRGFIVFCNIKLKQHDRN
IGNQFVSDIMKIEEIVECYNISGDYDFLMKVSAKDMKHYQDFVFNKLGSVESIGSTQSTFVMSEIKNMYG
>Mature_150_residues
MEQIDDVDLQLLNILHDNSKYTVKELAKMVNLSASPVFERIKRLENNGYIKKYIALLDAEKLNRGFIVFCNIKLKQHDRN
IGNQFVSDIMKIEEIVECYNISGDYDFLMKVSAKDMKHYQDFVFNKLGSVESIGSTQSTFVMSEIKNMYG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=143, Percent_Identity=34.2657342657343, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=35.6643356643357, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17375; Mature: 17375

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQIDDVDLQLLNILHDNSKYTVKELAKMVNLSASPVFERIKRLENNGYIKKYIALLDAE
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KLNRGFIVFCNIKLKQHDRNIGNQFVSDIMKIEEIVECYNISGDYDFLMKVSAKDMKHYQ
HCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DFVFNKLGSVESIGSTQSTFVMSEIKNMYG
HHHHHHHCCHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQIDDVDLQLLNILHDNSKYTVKELAKMVNLSASPVFERIKRLENNGYIKKYIALLDAE
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KLNRGFIVFCNIKLKQHDRNIGNQFVSDIMKIEEIVECYNISGDYDFLMKVSAKDMKHYQ
HCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DFVFNKLGSVESIGSTQSTFVMSEIKNMYG
HHHHHHHCCHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]