BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is actIII [H]

Identifier: 146301567

GI number: 146301567

Start: 4535953

End: 4536693

Strand: Direct

Name: actIII [H]

Synonym: Fjoh_3828

Alternate gene names: 146301567

Gene position: 4535953-4536693 (Clockwise)

Preceding gene: 146301566

Following gene: 146301568

Centisome position: 74.4

GC content: 38.73

Gene sequence:

>741_bases
ATGAAAACAGTATTAATTACAGGAGCAAACAAAGGAATTGGTTTTGAAACTGCCAGGCAGCTTTTACAAAAGGGATTTTT
TGTATTTATTGCAAGCCGCAATCCAGGTAACGGTCTGACGGCTCTCGAGAAACTCAAGGCAGAAGGATTTTCAAATGTTG
AAAGTATAGAATTGGATGTTACTGACCTTTGCTCAATACAGACAGCACGTGAGAAAATTGTTGAAAAGGTATCAGTTTTA
GATGTTCTGATCAATAATGCAGGTATTAACGGCGGGAGCCCTCCTTATACTGTACTGGAAGCTTCAAGCGTCCAATACTT
GGATGCTGTTAATACCAACTTAATTGGTACAGCCAATGTAACGCAAATCTTTATTGATCTGCTGAAAAAATCTTCGGAAC
CCCGAATAGTGAATGTTAGTACCAGTGTTGGTTCTCTTGCATTACAAAGTAATCCGCAATGGCCTGCTTACAGCTATGCC
AAATACGGAGTATATGCTGTATCCAAAGCAGCATTGAATATGTATACCATACAGTTAGCATATGAACTGCGGAATACCAA
TTTTAAGGTAAATGCTGTTTGTCCGGGGCTTACAAAAACCGATTTTACGTTCTTTAATGGTGGTGAAGTCGAAGTAGCAG
CGAATAGAATTATTAAATATGTCATAATTGATAATGCTGGACCAACCGGCGGATTTTTCAGTGAAGAAACAAATCCAGAA
ACTGGTTTGATACAGTGGTAA

Upstream 100 bases:

>100_bases
GAATCCGGAAAAACATACGCTGATGGGCTTTTTACCAAATGGTAAATGACACCGCTGTTTAATACTTGAATTTTGTATTG
AAATTTTAAAATTACAAAAT

Downstream 100 bases:

>100_bases
AAGAGTATTTTAGTTAGTAAGAGGTTGTTTTTATTCAACCTCTTACTGCTGTGGTGATGCTGTTCAAATCAACCTCCACT
CCAGCCAACCTCCCCTTTAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKTVLITGANKGIGFETARQLLQKGFFVFIASRNPGNGLTALEKLKAEGFSNVESIELDVTDLCSIQTAREKIVEKVSVL
DVLINNAGINGGSPPYTVLEASSVQYLDAVNTNLIGTANVTQIFIDLLKKSSEPRIVNVSTSVGSLALQSNPQWPAYSYA
KYGVYAVSKAALNMYTIQLAYELRNTNFKVNAVCPGLTKTDFTFFNGGEVEVAANRIIKYVIIDNAGPTGGFFSEETNPE
TGLIQW

Sequences:

>Translated_246_residues
MKTVLITGANKGIGFETARQLLQKGFFVFIASRNPGNGLTALEKLKAEGFSNVESIELDVTDLCSIQTAREKIVEKVSVL
DVLINNAGINGGSPPYTVLEASSVQYLDAVNTNLIGTANVTQIFIDLLKKSSEPRIVNVSTSVGSLALQSNPQWPAYSYA
KYGVYAVSKAALNMYTIQLAYELRNTNFKVNAVCPGLTKTDFTFFNGGEVEVAANRIIKYVIIDNAGPTGGFFSEETNPE
TGLIQW
>Mature_246_residues
MKTVLITGANKGIGFETARQLLQKGFFVFIASRNPGNGLTALEKLKAEGFSNVESIELDVTDLCSIQTAREKIVEKVSVL
DVLINNAGINGGSPPYTVLEASSVQYLDAVNTNLIGTANVTQIFIDLLKKSSEPRIVNVSTSVGSLALQSNPQWPAYSYA
KYGVYAVSKAALNMYTIQLAYELRNTNFKVNAVCPGLTKTDFTFFNGGEVEVAANRIIKYVIIDNAGPTGGFFSEETNPE
TGLIQW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI225579078, Length=210, Percent_Identity=31.4285714285714, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4502599, Length=282, Percent_Identity=27.6595744680851, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI44680136, Length=203, Percent_Identity=30.5418719211823, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI44680133, Length=203, Percent_Identity=30.5418719211823, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI17738292, Length=203, Percent_Identity=30.5418719211823, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI186928839, Length=208, Percent_Identity=32.6923076923077, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI10190746, Length=217, Percent_Identity=33.6405529953917, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI32483357, Length=210, Percent_Identity=29.5238095238095, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI166795268, Length=203, Percent_Identity=31.5270935960591, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031737, Length=210, Percent_Identity=32.3809523809524, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=28.4313725490196, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI19743808, Length=205, Percent_Identity=30.7317073170732, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4504503, Length=197, Percent_Identity=30.4568527918782, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI150247226, Length=204, Percent_Identity=31.3725490196078, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI33667109, Length=203, Percent_Identity=32.0197044334975, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI40254986, Length=201, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40548397, Length=203, Percent_Identity=32.0197044334975, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI214010158, Length=203, Percent_Identity=32.0197044334975, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI214010156, Length=203, Percent_Identity=32.0197044334975, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI22758144, Length=203, Percent_Identity=32.0197044334975, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI193804850, Length=208, Percent_Identity=29.3269230769231, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI109715829, Length=212, Percent_Identity=28.7735849056604, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI50726952, Length=203, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786701, Length=202, Percent_Identity=33.1683168316832, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787335, Length=202, Percent_Identity=29.7029702970297, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790717, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787820, Length=201, Percent_Identity=27.8606965174129, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082100, Length=202, Percent_Identity=30.1980198019802, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788459, Length=211, Percent_Identity=26.0663507109005, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082160, Length=229, Percent_Identity=25.764192139738, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=251, Percent_Identity=33.4661354581673, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17558006, Length=205, Percent_Identity=30.7317073170732, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17532177, Length=220, Percent_Identity=30.4545454545455, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17559962, Length=254, Percent_Identity=29.5275590551181, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=212, Percent_Identity=29.7169811320755, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=204, Percent_Identity=31.8627450980392, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17505416, Length=234, Percent_Identity=31.1965811965812, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17559964, Length=222, Percent_Identity=31.5315315315315, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=208, Percent_Identity=27.4038461538462, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=211, Percent_Identity=33.175355450237, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=211, Percent_Identity=32.2274881516588, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558990, Length=257, Percent_Identity=27.6264591439689, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=32.3671497584541, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=209, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541382, Length=252, Percent_Identity=26.5873015873016, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=211, Percent_Identity=30.3317535545024, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558996, Length=256, Percent_Identity=25.390625, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=210, Percent_Identity=27.6190476190476, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=218, Percent_Identity=31.651376146789, Blast_Score=79, Evalue=5e-16,
Organism=Drosophila melanogaster, GI45554248, Length=205, Percent_Identity=32.1951219512195, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24640117, Length=205, Percent_Identity=32.1951219512195, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=27.7227722772277, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571526, Length=227, Percent_Identity=31.2775330396476, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI19921754, Length=204, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24647946, Length=200, Percent_Identity=33, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45553409, Length=200, Percent_Identity=33, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647948, Length=200, Percent_Identity=33, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076371, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643142, Length=201, Percent_Identity=31.8407960199005, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24586328, Length=218, Percent_Identity=32.5688073394495, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=215, Percent_Identity=33.0232558139535, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24640547, Length=260, Percent_Identity=29.2307692307692, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI23397609, Length=231, Percent_Identity=32.4675324675325, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI22024069, Length=208, Percent_Identity=32.6923076923077, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21357041, Length=211, Percent_Identity=31.2796208530806, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28573296, Length=203, Percent_Identity=29.064039408867, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007234, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355319, Length=205, Percent_Identity=27.8048780487805, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26620; Mature: 26620

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVLITGANKGIGFETARQLLQKGFFVFIASRNPGNGLTALEKLKAEGFSNVESIELDV
CCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECH
TDLCSIQTAREKIVEKVSVLDVLINNAGINGGSPPYTVLEASSVQYLDAVNTNLIGTANV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEHHCCCCEECCCHH
TQIFIDLLKKSSEPRIVNVSTSVGSLALQSNPQWPAYSYAKYGVYAVSKAALNMYTIQLA
HHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHCCEEEHHHHEEEEEEEEE
YELRNTNFKVNAVCPGLTKTDFTFFNGGEVEVAANRIIKYVIIDNAGPTGGFFSEETNPE
EEECCCCEEEEEECCCCCCCCEEEECCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCC
TGLIQW
CCCEEC
>Mature Secondary Structure
MKTVLITGANKGIGFETARQLLQKGFFVFIASRNPGNGLTALEKLKAEGFSNVESIELDV
CCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECH
TDLCSIQTAREKIVEKVSVLDVLINNAGINGGSPPYTVLEASSVQYLDAVNTNLIGTANV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEHHCCCCEECCCHH
TQIFIDLLKKSSEPRIVNVSTSVGSLALQSNPQWPAYSYAKYGVYAVSKAALNMYTIQLA
HHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHCCEEEHHHHEEEEEEEEE
YELRNTNFKVNAVCPGLTKTDFTFFNGGEVEVAANRIIKYVIIDNAGPTGGFFSEETNPE
EEECCCCEEEEEECCCCCCCCEEEECCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCC
TGLIQW
CCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2469622; 12000953 [H]