Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
---|---|
Accession | NC_009441 |
Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146301542
Identifier: 146301542
GI number: 146301542
Start: 4510643
End: 4511779
Strand: Reverse
Name: 146301542
Synonym: Fjoh_3803
Alternate gene names: NA
Gene position: 4511779-4510643 (Counterclockwise)
Preceding gene: 146301543
Following gene: 146301541
Centisome position: 74.0
GC content: 34.04
Gene sequence:
>1137_bases ATGAATAAAACCCAAATCTCAGAATTGCTTAAAAAATATCAAGAAAAAACTTTATCTGATGAAGATCTGGATAAACTTGA TGCGTGGTATTTGAAAAAAGCGTCAAACAGCAATTTACAGCTTAATGAATACGAGCTGGAAGATAGTTACAAACTTCTAA AATCGAAATTACCGCTGCAAGAAGAAACTAAAGTAGTTCGTCTTTGGCCTCGAATAGCTGTTGCGGCTTCAATTGCTGTA CTAATGGGTACAGGAATATTTTATTTTACACAGCCAAAAGAAGAAAAGGTTCAGGTTGCCACAAAACCACAGGAAATTGC TCCGGGAGGTACTAAAGGTGTATTGACACTTTCGAACGGAAAACAAATTGTACTTTCTGAAATTACGGCAAAAGATACTA TTGCGCAAGAAGGAGAAGAAAATGAAGTAACAATCAAGATGAACGCAAATGGAGAAGTTACCTATATTATAAATCCAAAT ACAGACGGAGGTAAAGATGATAATTCATTCAACACTCTTTCAACACCAATAGGAGGACAGTATAATATTATTTTAGCGGA TGGTACCAAAGTATATCTAAATGCGGTTTCTTCTATTAAATATCCAACACAATTCAACGGAGATAAAAGAGTTGTTGAGT TAGAAGGTGAAGCTTATTTTGAAGTAGCCAAAAACAAAAACAAACCTTTTATTGTAAAATCCAATAACCAGTCTATTGAA GTATTGGGAACACATTTTAATGTTCATTCGTATAATAATGAATCGGTTGTTAAAACTACTTTGTTAGAAGGAAGCGTAGC TGTTACTTATAAAAATCAAAAAGCGATTTTGAAACCTGGACAGCAGTCTGATGTATCTGATAATTTTTCTAAAATTAAAG TAAAAGAAGTAGATCCGGAAGAAGCGGTTGCCTGGAAAAACGGCCGTTTCAAATTTGACAATGCCGATCTGAAAAATGTA ATGCGACAGTTGGAACGCTGGTACGGAATAAAAGTAGAATACCGTGGGAATGTCTCTGATGTTCGTTTTAACGGAGGTAC ATTTAGAAATAAAAATTTGTCTGAAGTATTAAAAGTACTTGAGCTTAGTAATATAAAATTTAAGGTTGAAGGAAAAACAG TAATTGTAGATCCCTGA
Upstream 100 bases:
>100_bases TATAGTAATAATTTTTTAATTTTTTTTTGTCATTGTCTATGACAAAATCTCTTTCTAACTGTCTTACTATTAAACAAGAC AAAAATTTCGTGTAGTAATT
Downstream 100 bases:
>100_bases TTTTAAGTTTACCTGAATATACTGTGACTATAAACTAAAAAACCAGAAGCAGTTGCGATGCTTCTGGTTGTTATAAAAGT GTATAGCCAGTATAAGTTGT
Product: FecR anti-FecI sigma factor
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MNKTQISELLKKYQEKTLSDEDLDKLDAWYLKKASNSNLQLNEYELEDSYKLLKSKLPLQEETKVVRLWPRIAVAASIAV LMGTGIFYFTQPKEEKVQVATKPQEIAPGGTKGVLTLSNGKQIVLSEITAKDTIAQEGEENEVTIKMNANGEVTYIINPN TDGGKDDNSFNTLSTPIGGQYNIILADGTKVYLNAVSSIKYPTQFNGDKRVVELEGEAYFEVAKNKNKPFIVKSNNQSIE VLGTHFNVHSYNNESVVKTTLLEGSVAVTYKNQKAILKPGQQSDVSDNFSKIKVKEVDPEEAVAWKNGRFKFDNADLKNV MRQLERWYGIKVEYRGNVSDVRFNGGTFRNKNLSEVLKVLELSNIKFKVEGKTVIVDP
Sequences:
>Translated_378_residues MNKTQISELLKKYQEKTLSDEDLDKLDAWYLKKASNSNLQLNEYELEDSYKLLKSKLPLQEETKVVRLWPRIAVAASIAV LMGTGIFYFTQPKEEKVQVATKPQEIAPGGTKGVLTLSNGKQIVLSEITAKDTIAQEGEENEVTIKMNANGEVTYIINPN TDGGKDDNSFNTLSTPIGGQYNIILADGTKVYLNAVSSIKYPTQFNGDKRVVELEGEAYFEVAKNKNKPFIVKSNNQSIE VLGTHFNVHSYNNESVVKTTLLEGSVAVTYKNQKAILKPGQQSDVSDNFSKIKVKEVDPEEAVAWKNGRFKFDNADLKNV MRQLERWYGIKVEYRGNVSDVRFNGGTFRNKNLSEVLKVLELSNIKFKVEGKTVIVDP >Mature_378_residues MNKTQISELLKKYQEKTLSDEDLDKLDAWYLKKASNSNLQLNEYELEDSYKLLKSKLPLQEETKVVRLWPRIAVAASIAV LMGTGIFYFTQPKEEKVQVATKPQEIAPGGTKGVLTLSNGKQIVLSEITAKDTIAQEGEENEVTIKMNANGEVTYIINPN TDGGKDDNSFNTLSTPIGGQYNIILADGTKVYLNAVSSIKYPTQFNGDKRVVELEGEAYFEVAKNKNKPFIVKSNNQSIE VLGTHFNVHSYNNESVVKTTLLEGSVAVTYKNQKAILKPGQQSDVSDNFSKIKVKEVDPEEAVAWKNGRFKFDNADLKNV MRQLERWYGIKVEYRGNVSDVRFNGGTFRNKNLSEVLKVLELSNIKFKVEGKTVIVDP
Specific function: Unknown
COG id: COG3712
COG function: function code PT; Fe2+-dicitrate sensor, membrane component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42406; Mature: 42406
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTQISELLKKYQEKTLSDEDLDKLDAWYLKKASNSNLQLNEYELEDSYKLLKSKLPLQ CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHCCCCC EETKVVRLWPRIAVAASIAVLMGTGIFYFTQPKEEKVQVATKPQEIAPGGTKGVLTLSNG CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHCCCCCCCEEEEECCC KQIVLSEITAKDTIAQEGEENEVTIKMNANGEVTYIINPNTDGGKDDNSFNTLSTPIGGQ CEEEEEECCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCE YNIILADGTKVYLNAVSSIKYPTQFNGDKRVVELEGEAYFEVAKNKNKPFIVKSNNQSIE EEEEEECCCEEEEEHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCEEE VLGTHFNVHSYNNESVVKTTLLEGSVAVTYKNQKAILKPGQQSDVSDNFSKIKVKEVDPE EEEEEEEEEECCCCCEEEEEEECCEEEEEEECCEEEECCCCCCCCCCCCEEEEEEECCHH EAVAWKNGRFKFDNADLKNVMRQLERWYGIKVEYRGNVSDVRFNGGTFRNKNLSEVLKVL HHEEECCCEEEECCCHHHHHHHHHHHHHCEEEEECCCCCEEEECCCCCCCCCHHHHHHHH ELSNIKFKVEGKTVIVDP HHCCCEEEECCEEEEECC >Mature Secondary Structure MNKTQISELLKKYQEKTLSDEDLDKLDAWYLKKASNSNLQLNEYELEDSYKLLKSKLPLQ CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHCCCCC EETKVVRLWPRIAVAASIAVLMGTGIFYFTQPKEEKVQVATKPQEIAPGGTKGVLTLSNG CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHCCCCCCCEEEEECCC KQIVLSEITAKDTIAQEGEENEVTIKMNANGEVTYIINPNTDGGKDDNSFNTLSTPIGGQ CEEEEEECCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCE YNIILADGTKVYLNAVSSIKYPTQFNGDKRVVELEGEAYFEVAKNKNKPFIVKSNNQSIE EEEEEECCCEEEEEHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCEEE VLGTHFNVHSYNNESVVKTTLLEGSVAVTYKNQKAILKPGQQSDVSDNFSKIKVKEVDPE EEEEEEEEEECCCCCEEEEEEECCEEEEEEECCEEEECCCCCCCCCCCCEEEEEEECCHH EAVAWKNGRFKFDNADLKNVMRQLERWYGIKVEYRGNVSDVRFNGGTFRNKNLSEVLKVL HHEEECCCEEEECCCHHHHHHHHHHHHHCEEEEECCCCCEEEECCCCCCCCCHHHHHHHH ELSNIKFKVEGKTVIVDP HHCCCEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA