| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300925
Identifier: 146300925
GI number: 146300925
Start: 3787823
End: 3789046
Strand: Direct
Name: 146300925
Synonym: Fjoh_3180
Alternate gene names: NA
Gene position: 3787823-3789046 (Clockwise)
Preceding gene: 146300924
Following gene: 146300928
Centisome position: 62.13
GC content: 34.97
Gene sequence:
>1224_bases ATGAAAACAAATCGATTTTTTATAAAAAATGCTGCATTAGCCATAATGTGTTCTTTATTTGCATTAACATCGTGCAGCTC AGATGATAACAAGACAGATGACGAAGGTCAGGGTAATAATCCTGCAGTTATTGCAGCAGTTCGTGTAAATACTCCATCAG GAAGAGTTTTTTATTTAGGAGCATATGACAAATTCCCTTCAACTCTTGATTATAAAACAATGACAGAGATTGGGCCGGGT GCTACAATATATTCTTATGGCGAACATCCTTATGTATGGAATGGTACAGCCTCAACCTTAACGAGATACAATGTAAGCAA CGACATGAAAATTTCATCTTCAGATGCTTTAAGTCTTGCTGGAACAGGTGTAAGCGGTACTTTTGGTCCTCCTGCTTTCG TGTCTGAAACAGAAGCTTATTTTTTCGCCTTAAATGATGGAAAAATTATCAAGTTCAACCCAACAAGCATGACAATAACT GAAACTATAGCAGTTACTCCATTACCATTAAGTAATGATGCTGCTGTTAAAACATCTACTTACAGCAGTTATGTTACTTC TGCAAAAAAAATTATTTTACCTGTAGGAGCAACACCAACAGATTATAATAAGTTTCCACAATATGCACAAATTGCAGTTT TTGATATAGCATCAAAAGTGGTTACTTATGTTAAGGATACACGTATGTCAATGGGATATTTCACTTTTGCTAAAGGTAAT GACGGAACATTGTATTACAGATCTTCTCGTGAAACAGCTCTTTCTTTAGATTACAGTACTGTAACCGGCAACCCGCCAAC AGGAGGATTATTAAAGGTAAATCCTGACGGAACATTTGATCCTAACTTTTTTGTAGATCTAAGAGCTGCTATAAATGCAC ATTCAGTAAATGTAGTGCCTTATGTTAACGGAGATAAAGCACTTGCTCAATATTTAGATAACACATTTACGCCGCCGGCT AAACCTGCAGAATGGTACAATGCTACAACTAAATATGCACTTGTAGATTTAAAAACTTTAAAAGTAGAACCTTTTACTTC TTTTGAACAATACGGAACAGTATATTCAGTAGGAACAATTGATGGAGTTGAGTATTATGGAAATATTCCTACTGACAGTA ATAATTTTAAATACAGACTTTTAAAACAAAAAGGAGCTGCTGAATTTGAAGCAATTTCTGAAGCTCTGGGCGGTAGTTTA ATCTTTGTTGGAAAATTAAGATAA
Upstream 100 bases:
>100_bases AATGAAAAAAATTATGACTTTTTTGGAGTACAAAAACCGGGAAGATCATTCAATATAAAATTAGTAACCCAATTTTAATT TAATTATATAACCAATCAGT
Downstream 100 bases:
>100_bases GCATTCTCTCTTAATTTTGTTTTTTAGAATATAAATGGTGTTACAATTATAAAATTTAAACACAGATTATTCGTTAAAAA AAGAATCTGCCCGAAAGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MKTNRFFIKNAALAIMCSLFALTSCSSDDNKTDDEGQGNNPAVIAAVRVNTPSGRVFYLGAYDKFPSTLDYKTMTEIGPG ATIYSYGEHPYVWNGTASTLTRYNVSNDMKISSSDALSLAGTGVSGTFGPPAFVSETEAYFFALNDGKIIKFNPTSMTIT ETIAVTPLPLSNDAAVKTSTYSSYVTSAKKIILPVGATPTDYNKFPQYAQIAVFDIASKVVTYVKDTRMSMGYFTFAKGN DGTLYYRSSRETALSLDYSTVTGNPPTGGLLKVNPDGTFDPNFFVDLRAAINAHSVNVVPYVNGDKALAQYLDNTFTPPA KPAEWYNATTKYALVDLKTLKVEPFTSFEQYGTVYSVGTIDGVEYYGNIPTDSNNFKYRLLKQKGAAEFEAISEALGGSL IFVGKLR
Sequences:
>Translated_407_residues MKTNRFFIKNAALAIMCSLFALTSCSSDDNKTDDEGQGNNPAVIAAVRVNTPSGRVFYLGAYDKFPSTLDYKTMTEIGPG ATIYSYGEHPYVWNGTASTLTRYNVSNDMKISSSDALSLAGTGVSGTFGPPAFVSETEAYFFALNDGKIIKFNPTSMTIT ETIAVTPLPLSNDAAVKTSTYSSYVTSAKKIILPVGATPTDYNKFPQYAQIAVFDIASKVVTYVKDTRMSMGYFTFAKGN DGTLYYRSSRETALSLDYSTVTGNPPTGGLLKVNPDGTFDPNFFVDLRAAINAHSVNVVPYVNGDKALAQYLDNTFTPPA KPAEWYNATTKYALVDLKTLKVEPFTSFEQYGTVYSVGTIDGVEYYGNIPTDSNNFKYRLLKQKGAAEFEAISEALGGSL IFVGKLR >Mature_407_residues MKTNRFFIKNAALAIMCSLFALTSCSSDDNKTDDEGQGNNPAVIAAVRVNTPSGRVFYLGAYDKFPSTLDYKTMTEIGPG ATIYSYGEHPYVWNGTASTLTRYNVSNDMKISSSDALSLAGTGVSGTFGPPAFVSETEAYFFALNDGKIIKFNPTSMTIT ETIAVTPLPLSNDAAVKTSTYSSYVTSAKKIILPVGATPTDYNKFPQYAQIAVFDIASKVVTYVKDTRMSMGYFTFAKGN DGTLYYRSSRETALSLDYSTVTGNPPTGGLLKVNPDGTFDPNFFVDLRAAINAHSVNVVPYVNGDKALAQYLDNTFTPPA KPAEWYNATTKYALVDLKTLKVEPFTSFEQYGTVYSVGTIDGVEYYGNIPTDSNNFKYRLLKQKGAAEFEAISEALGGSL IFVGKLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44219; Mature: 44219
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNRFFIKNAALAIMCSLFALTSCSSDDNKTDDEGQGNNPAVIAAVRVNTPSGRVFYLG CCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEE AYDKFPSTLDYKTMTEIGPGATIYSYGEHPYVWNGTASTLTRYNVSNDMKISSSDALSLA CCCCCCCCCCCCHHHHCCCCCEEEECCCCCEEECCCHHEEEEECCCCCEEECCCCCEEEE GTGVSGTFGPPAFVSETEAYFFALNDGKIIKFNPTSMTITETIAVTPLPLSNDAAVKTST CCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCEEEECC YSSYVTSAKKIILPVGATPTDYNKFPQYAQIAVFDIASKVVTYVKDTRMSMGYFTFAKGN HHHHHHCCEEEEEECCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHCCCCCCEEEEEECC DGTLYYRSSRETALSLDYSTVTGNPPTGGLLKVNPDGTFDPNFFVDLRAAINAHSVNVVP CCEEEEECCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEEECCCCEEEEEE YVNGDKALAQYLDNTFTPPAKPAEWYNATTKYALVDLKTLKVEPFTSFEQYGTVYSVGTI EECCHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEEEEEECCCCCHHHCCCEEEECCC DGVEYYGNIPTDSNNFKYRLLKQKGAAEFEAISEALGGSLIFVGKLR CCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECC >Mature Secondary Structure MKTNRFFIKNAALAIMCSLFALTSCSSDDNKTDDEGQGNNPAVIAAVRVNTPSGRVFYLG CCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEE AYDKFPSTLDYKTMTEIGPGATIYSYGEHPYVWNGTASTLTRYNVSNDMKISSSDALSLA CCCCCCCCCCCCHHHHCCCCCEEEECCCCCEEECCCHHEEEEECCCCCEEECCCCCEEEE GTGVSGTFGPPAFVSETEAYFFALNDGKIIKFNPTSMTITETIAVTPLPLSNDAAVKTST CCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCEEEECC YSSYVTSAKKIILPVGATPTDYNKFPQYAQIAVFDIASKVVTYVKDTRMSMGYFTFAKGN HHHHHHCCEEEEEECCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHCCCCCCEEEEEECC DGTLYYRSSRETALSLDYSTVTGNPPTGGLLKVNPDGTFDPNFFVDLRAAINAHSVNVVP CCEEEEECCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEEECCCCEEEEEE YVNGDKALAQYLDNTFTPPAKPAEWYNATTKYALVDLKTLKVEPFTSFEQYGTVYSVGTI EECCHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEEEEEECCCCCHHHCCCEEEECCC DGVEYYGNIPTDSNNFKYRLLKQKGAAEFEAISEALGGSLIFVGKLR CCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA