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The map label for this gene is ytcD [H]

Identifier: 146300848

GI number: 146300848

Start: 3672555

End: 3672893

Strand: Direct

Name: ytcD [H]

Synonym: Fjoh_3103

Alternate gene names: 146300848

Gene position: 3672555-3672893 (Clockwise)

Preceding gene: 146300846

Following gene: 146300849

Centisome position: 60.24

GC content: 38.05

Gene sequence:

>339_bases
ATGATACCACAAGAAAAAGACTGCTCAAAAGCTATGCTTTCTATAAAAGATGCACTCGAAGCAGTGAGCGGAAACTGGAA
ACTGCTTATTCTTTATGCTCTTTGTTCCGGTCCAAAGCGTTTCACTGAGCTAAAGAAAGAAGTAATTGGGATTACAGATA
AAACTCTTGCCAGAGAATTAAAAAATCTTCAGGCTGATAAACTTATAAGCCGGCACGTTTATGACAAAACACCAATATTA
ATCGAATATCAAATAACAGACCATGGAAGATCACTGAACAAAGTATTGTATGAATTGTGGAACTGGGGTCTTTCGCATCG
CAGAGAGGTAATTGGCTGA

Upstream 100 bases:

>100_bases
TTTTTACATTCCAAAATTACTTATATTTACTTTCCAAATGATAGCACTTCCCTTTTGGAAAGTACTTTCCAAAAGGGAAG
TGAACTAAAATAAAAATTGC

Downstream 100 bases:

>100_bases
AGACAGCTCAGTCATAAAATAATTTTAATTAAAAATGTCTCAATAATGGGACATTTTTTTTATATTTGTACCTATGAAAG
ACACAAAAGGTAAAATAATT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MIPQEKDCSKAMLSIKDALEAVSGNWKLLILYALCSGPKRFTELKKEVIGITDKTLARELKNLQADKLISRHVYDKTPIL
IEYQITDHGRSLNKVLYELWNWGLSHRREVIG

Sequences:

>Translated_112_residues
MIPQEKDCSKAMLSIKDALEAVSGNWKLLILYALCSGPKRFTELKKEVIGITDKTLARELKNLQADKLISRHVYDKTPIL
IEYQITDHGRSLNKVLYELWNWGLSHRREVIG
>Mature_112_residues
MIPQEKDCSKAMLSIKDALEAVSGNWKLLILYALCSGPKRFTELKKEVIGITDKTLARELKNLQADKLISRHVYDKTPIL
IEYQITDHGRSLNKVLYELWNWGLSHRREVIG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=87, Percent_Identity=32.183908045977, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12909; Mature: 12909

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPQEKDCSKAMLSIKDALEAVSGNWKLLILYALCSGPKRFTELKKEVIGITDKTLAREL
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
KNLQADKLISRHVYDKTPILIEYQITDHGRSLNKVLYELWNWGLSHRREVIG
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MIPQEKDCSKAMLSIKDALEAVSGNWKLLILYALCSGPKRFTELKKEVIGITDKTLAREL
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
KNLQADKLISRHVYDKTPILIEYQITDHGRSLNKVLYELWNWGLSHRREVIG
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]