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The map label for this gene is araC [C]

Identifier: 146300841

GI number: 146300841

Start: 3664504

End: 3665325

Strand: Reverse

Name: araC [C]

Synonym: Fjoh_3096

Alternate gene names: 146300841

Gene position: 3665325-3664504 (Counterclockwise)

Preceding gene: 146300844

Following gene: 146300805

Centisome position: 60.12

GC content: 34.67

Gene sequence:

>822_bases
ATGGATCGTATAGATTACCCAAAAATTATATTGTTAAGCGCTTCCAGTGCTCAAGATTTTCCAGAAAACTATCAATCGGC
TTACCATAGCCATATCTACTGCGAGCGCGGAAGTGTAAATTTCATTTTTAACAATATGCCTTTCAAATGCGGGAAGGGCG
AATTTATTTTTTGGCTGGCCGACAGCAAAATTTCTGAACTGGAGTTTTCTTCAAATTTTAAGGCAACCGTGTTTTTTGTA
GAAAAGCATTTGCTAACGGATAATTTTCCAAGTCTTAATATTGGTATTGATGCTATTGTTCATCATCAGATAAATCCAAT
ATTGAAACCTGATAAAAAAAATAAGGATAGGATTTTGAAAAATTTTAAAATGCTTTATCAGAAATCCATAGAGAATGATA
ATCGTTTTTACAAAGAAATTTTGAAACTGCAGATGCAGCTTTTTTTACTGGAAATGTGGGATATTTTTATCGATCAGCTG
GAACGCCGAGAACGCAGCCCCCAAAGTGGGACGTTGTACGAACGTTTTCTGTATTTGGTTGAAGCAAATTGTATGAAAAA
CAGAGAAGTGCGTTTTTATAGTGGCGAACTCAATATAACTCCGAAATACCTTAACCAAATCTGTAAATCTAATACTGGAA
TAAGTGCTTCCGAATGGATACAGCGTTATACCAAAGACCGCATTGTCCTTTTGCTTAATAACAAAAAATTGAACATTTCA
GAAATCGCTGATGAGATGGGCTTTTCAAGCCGTTCATTTTTTACAAGATATGTGAAAAAGGTTTTAGGAATCAGTCCAAG
TGAATATAGACAGCAAATATAA

Upstream 100 bases:

>100_bases
TAATGCAAAGATATAATGCGATTTTCTTCCATTTGTTACATATAACACTGATATAATGTCACATATTTCGTATTTTAGCA
TGAAATTGTATTGAATTAAA

Downstream 100 bases:

>100_bases
GTTTATTTTATACTTAGAGATAATTGTTTGCAGCCATTGCAAAGCAATAAACCATAATTGGCCTCGGTTGTTTAATCTTA
GCTCATATAGTTGGTCGAAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; AraC-Family Transcriptional Regulator

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDRIDYPKIILLSASSAQDFPENYQSAYHSHIYCERGSVNFIFNNMPFKCGKGEFIFWLADSKISELEFSSNFKATVFFV
EKHLLTDNFPSLNIGIDAIVHHQINPILKPDKKNKDRILKNFKMLYQKSIENDNRFYKEILKLQMQLFLLEMWDIFIDQL
ERRERSPQSGTLYERFLYLVEANCMKNREVRFYSGELNITPKYLNQICKSNTGISASEWIQRYTKDRIVLLLNNKKLNIS
EIADEMGFSSRSFFTRYVKKVLGISPSEYRQQI

Sequences:

>Translated_273_residues
MDRIDYPKIILLSASSAQDFPENYQSAYHSHIYCERGSVNFIFNNMPFKCGKGEFIFWLADSKISELEFSSNFKATVFFV
EKHLLTDNFPSLNIGIDAIVHHQINPILKPDKKNKDRILKNFKMLYQKSIENDNRFYKEILKLQMQLFLLEMWDIFIDQL
ERRERSPQSGTLYERFLYLVEANCMKNREVRFYSGELNITPKYLNQICKSNTGISASEWIQRYTKDRIVLLLNNKKLNIS
EIADEMGFSSRSFFTRYVKKVLGISPSEYRQQI
>Mature_273_residues
MDRIDYPKIILLSASSAQDFPENYQSAYHSHIYCERGSVNFIFNNMPFKCGKGEFIFWLADSKISELEFSSNFKATVFFV
EKHLLTDNFPSLNIGIDAIVHHQINPILKPDKKNKDRILKNFKMLYQKSIENDNRFYKEILKLQMQLFLLEMWDIFIDQL
ERRERSPQSGTLYERFLYLVEANCMKNREVRFYSGELNITPKYLNQICKSNTGISASEWIQRYTKDRIVLLLNNKKLNIS
EIADEMGFSSRSFFTRYVKKVLGISPSEYRQQI

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32320; Mature: 32320

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDYPKIILLSASSAQDFPENYQSAYHSHIYCERGSVNFIFNNMPFKCGKGEFIFWLA
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCEEEEEE
DSKISELEFSSNFKATVFFVEKHLLTDNFPSLNIGIDAIVHHQINPILKPDKKNKDRILK
CCCCHHEECCCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHH
NFKMLYQKSIENDNRFYKEILKLQMQLFLLEMWDIFIDQLERRERSPQSGTLYERFLYLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
EANCMKNREVRFYSGELNITPKYLNQICKSNTGISASEWIQRYTKDRIVLLLNNKKLNIS
HHHHHCCCCEEEEECCEEECHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHH
EIADEMGFSSRSFFTRYVKKVLGISPSEYRQQI
HHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure
MDRIDYPKIILLSASSAQDFPENYQSAYHSHIYCERGSVNFIFNNMPFKCGKGEFIFWLA
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCEEEEEE
DSKISELEFSSNFKATVFFVEKHLLTDNFPSLNIGIDAIVHHQINPILKPDKKNKDRILK
CCCCHHEECCCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHH
NFKMLYQKSIENDNRFYKEILKLQMQLFLLEMWDIFIDQLERRERSPQSGTLYERFLYLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
EANCMKNREVRFYSGELNITPKYLNQICKSNTGISASEWIQRYTKDRIVLLLNNKKLNIS
HHHHHCCCCEEEEECCEEECHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHH
EIADEMGFSSRSFFTRYVKKVLGISPSEYRQQI
HHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA