| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300749
Identifier: 146300749
GI number: 146300749
Start: 3546544
End: 3547866
Strand: Reverse
Name: 146300749
Synonym: Fjoh_3000
Alternate gene names: NA
Gene position: 3547866-3546544 (Counterclockwise)
Preceding gene: 146300750
Following gene: 146300748
Centisome position: 58.19
GC content: 56.76
Gene sequence:
>1323_bases ATGAAAGAAAATAAGAAAAAAGAAGGCGTTATGCTTTGGGAGCATGGCGCTGAAGAAAAATCAGACAGTGTGGACGAAAA AAGCGGCAAAATGGAGAAGCTTAAGAAATCGCTCATATTTGGGCTGATGGGAATCGTATGCGCAGGTTGCCTTTATCTGA TATTCAGGCCCTCGCCCGAGAAGGAGAGCGGGCAGGCCATCGGGCTCAATAACATCGTTCCGCAGGCCGCAGACAATGAA ATGCAGGCGGACAAGGCAAAGGCCTATGAGCAGGAGATGCTCGAGCAGAAGCAGGAGGATAAGCGCAGAGCGCTTACCAC GCTGGCGGATTATTGGAAACAGGACAGCGTAACGGCAGATGAGTCCCCCTCATCTGCAAATGCGGTGCAGACGGCAGGAC AGGAACCCAGGGAGACAAATTCTGCGCTCGGCACGTACCGAAAGGCACAGAACGCACTTGGCAGCTTCTATCAGGACAGC GGTGGTGAGGCTGATATGCTGCGCAGGGAGGTTGCCGAGCTCAAATCGGAGCTTGCCCAGAGGGATGCTGCGCCTTCGGT GACGGTAGACGGACAGCTGGCGCTTATGGAAAAGTCGTATCAGATGGCCGCGAAGTACCTGCCTTCTGCACCTGCCGCCC AGCCGCTGCAGAGAGCTGACTCGTCTTCACGTGCCAAGAGGCCTTCAATTGCAGATGCGCCTTATTTTGCGGGAGCTGCA CCTGAGAGGAAAACTGCCGTATCGGTTCTTCGCCCTATGGCGAATGCTGGTGCGGATGCTGAACGCGGCGTGCGGCCGAA TGCCCGGTCTTTTTACACGGCGGATGCCAAAGAGCGGGAGGTTCCTGTCAGGAACAGCATCAAGGCCTGCGTGGACCAGA CGCAGTCCGTGGCAGGAGAGAGCGCTGTAAAGCTCCGCCTGCTGGAGCCGGCGGCCATACCCGGCGGCACCCTTGAGAAA GGGAGCGTGCTCACCGCCACAGCGAAAATACAGGGCGGGCGCCTGCAGCTGAAGATCAGCTCCATTGCCTTCAATGGAAC CATCCTGCCTGTTGATATCAGCGCTTTTGACCTGGACGGCCAGCTGGGCCTTTTGGTGCCTTATTCGGCGGAAAGGACGG CTGCGGGGCAGATGGCGGGCAATATGGGACAGCAGTCCGCAACGAGCCTGATGCTGACCCAGTCGGCAGGACAGCAGGTG GCCGCAGATCTCAGCAGGGGAGTCCTGCAGGGGATATCAGGATATTTCTCCAAAAAGGTAAAGACGCCAAAGGTAATGCT CAAGGCTGGGCACCAGCTTTTTCTGGTCTCCAAAAAACAATAG
Upstream 100 bases:
>100_bases AAGCTGCCTGAGACTGGAACATATTCAGGATCCTTCGCCAGCAGGAAAGGAAAGTCCTGCGGTAATAAAGGGCTGCATGA ATAAATTAAAAGATTAAGAT
Downstream 100 bases:
>100_bases CAATCAAAAGAATATAAAGATGAAAAGATATTATGAAAAATACTGGACGGCGGTGCTTGCAGTTCTCTGCGTCCAGCTGT GCTTTCCGCAGAGCAGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: Conjugate Transposon Protein; Conjugate Transposon; Conserved Protein Found In Conjugate Transposon TraM; Conjugate Transposon TraM; Plasmid Transfer Protein; Conjugal Transfer Protein TraM; TraM Protein
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MKENKKKEGVMLWEHGAEEKSDSVDEKSGKMEKLKKSLIFGLMGIVCAGCLYLIFRPSPEKESGQAIGLNNIVPQAADNE MQADKAKAYEQEMLEQKQEDKRRALTTLADYWKQDSVTADESPSSANAVQTAGQEPRETNSALGTYRKAQNALGSFYQDS GGEADMLRREVAELKSELAQRDAAPSVTVDGQLALMEKSYQMAAKYLPSAPAAQPLQRADSSSRAKRPSIADAPYFAGAA PERKTAVSVLRPMANAGADAERGVRPNARSFYTADAKEREVPVRNSIKACVDQTQSVAGESAVKLRLLEPAAIPGGTLEK GSVLTATAKIQGGRLQLKISSIAFNGTILPVDISAFDLDGQLGLLVPYSAERTAAGQMAGNMGQQSATSLMLTQSAGQQV AADLSRGVLQGISGYFSKKVKTPKVMLKAGHQLFLVSKKQ
Sequences:
>Translated_440_residues MKENKKKEGVMLWEHGAEEKSDSVDEKSGKMEKLKKSLIFGLMGIVCAGCLYLIFRPSPEKESGQAIGLNNIVPQAADNE MQADKAKAYEQEMLEQKQEDKRRALTTLADYWKQDSVTADESPSSANAVQTAGQEPRETNSALGTYRKAQNALGSFYQDS GGEADMLRREVAELKSELAQRDAAPSVTVDGQLALMEKSYQMAAKYLPSAPAAQPLQRADSSSRAKRPSIADAPYFAGAA PERKTAVSVLRPMANAGADAERGVRPNARSFYTADAKEREVPVRNSIKACVDQTQSVAGESAVKLRLLEPAAIPGGTLEK GSVLTATAKIQGGRLQLKISSIAFNGTILPVDISAFDLDGQLGLLVPYSAERTAAGQMAGNMGQQSATSLMLTQSAGQQV AADLSRGVLQGISGYFSKKVKTPKVMLKAGHQLFLVSKKQ >Mature_440_residues MKENKKKEGVMLWEHGAEEKSDSVDEKSGKMEKLKKSLIFGLMGIVCAGCLYLIFRPSPEKESGQAIGLNNIVPQAADNE MQADKAKAYEQEMLEQKQEDKRRALTTLADYWKQDSVTADESPSSANAVQTAGQEPRETNSALGTYRKAQNALGSFYQDS GGEADMLRREVAELKSELAQRDAAPSVTVDGQLALMEKSYQMAAKYLPSAPAAQPLQRADSSSRAKRPSIADAPYFAGAA PERKTAVSVLRPMANAGADAERGVRPNARSFYTADAKEREVPVRNSIKACVDQTQSVAGESAVKLRLLEPAAIPGGTLEK GSVLTATAKIQGGRLQLKISSIAFNGTILPVDISAFDLDGQLGLLVPYSAERTAAGQMAGNMGQQSATSLMLTQSAGQQV AADLSRGVLQGISGYFSKKVKTPKVMLKAGHQLFLVSKKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47179; Mature: 47179
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKENKKKEGVMLWEHGAEEKSDSVDEKSGKMEKLKKSLIFGLMGIVCAGCLYLIFRPSPE CCCCCCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KESGQAIGLNNIVPQAADNEMQADKAKAYEQEMLEQKQEDKRRALTTLADYWKQDSVTAD CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ESPSSANAVQTAGQEPRETNSALGTYRKAQNALGSFYQDSGGEADMLRREVAELKSELAQ CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH RDAAPSVTVDGQLALMEKSYQMAAKYLPSAPAAQPLQRADSSSRAKRPSIADAPYFAGAA HCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCC PERKTAVSVLRPMANAGADAERGVRPNARSFYTADAKEREVPVRNSIKACVDQTQSVAGE CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECCCHHCCCCHHHHHHHHHHHHHHHCCC SAVKLRLLEPAAIPGGTLEKGSVLTATAKIQGGRLQLKISSIAFNGTILPVDISAFDLDG CCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCEEEEEEEEEEECCC QLGLLVPYSAERTAAGQMAGNMGQQSATSLMLTQSAGQQVAADLSRGVLQGISGYFSKKV CEEEEECCCCCHHHHHHHHCCCCHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KTPKVMLKAGHQLFLVSKKQ CCHHHHHHCCCEEEEEECCC >Mature Secondary Structure MKENKKKEGVMLWEHGAEEKSDSVDEKSGKMEKLKKSLIFGLMGIVCAGCLYLIFRPSPE CCCCCCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KESGQAIGLNNIVPQAADNEMQADKAKAYEQEMLEQKQEDKRRALTTLADYWKQDSVTAD CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ESPSSANAVQTAGQEPRETNSALGTYRKAQNALGSFYQDSGGEADMLRREVAELKSELAQ CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH RDAAPSVTVDGQLALMEKSYQMAAKYLPSAPAAQPLQRADSSSRAKRPSIADAPYFAGAA HCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCC PERKTAVSVLRPMANAGADAERGVRPNARSFYTADAKEREVPVRNSIKACVDQTQSVAGE CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECCCHHCCCCHHHHHHHHHHHHHHHCCC SAVKLRLLEPAAIPGGTLEKGSVLTATAKIQGGRLQLKISSIAFNGTILPVDISAFDLDG CCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCEEEEEEEEEEECCC QLGLLVPYSAERTAAGQMAGNMGQQSATSLMLTQSAGQQVAADLSRGVLQGISGYFSKKV CEEEEECCCCCHHHHHHHHCCCCHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KTPKVMLKAGHQLFLVSKKQ CCHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA