| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is pheT [H]
Identifier: 146300717
GI number: 146300717
Start: 3518428
End: 3520848
Strand: Direct
Name: pheT [H]
Synonym: Fjoh_2968
Alternate gene names: 146300717
Gene position: 3518428-3520848 (Clockwise)
Preceding gene: 146300712
Following gene: 146300719
Centisome position: 57.71
GC content: 35.19
Gene sequence:
>2421_bases ATGAAAATATCTTACAACTGGTTAAAACAGTTTATTAAAACTGATTGGACATCTGAGCAAACTTCTGAATTATTGACAGA TTTAGGTCTTGAGGTTGAAGTTGTCGAGAAATACCAGTCTATTAAAGGCGGATTAGAAGGAGTTGTTGTAGGACATGTAC TTACCTGCGAAAAACATCCTGATGCAGACAGATTAAAAGTTACTACTGTAAATATTGGTTTAGAAGCTCCTGTACAAATT GTATGCGGTGCTGCAAATGTTGCTGCTGGACAAAAAGTGCCGGTTGCTACTATTGGAACTGTTCTATATGATAAGGAAGG CACTGAGTTTACTATTAAAAAAGGTAAAATCCGCGGACAGGACAGCCACGGGATGATTTGTGCCGAGGACGAGTTAGGCC TTGGAACAAGCCACGACGGAATTATGGTTCTGGATGAAAACCTGGTTCCGGGAACTCCTGCTTCTGAAGTTTTCCAGATT GCAAATGATGAAGTTTTCGAAATTGGATTGACACCAAACCGTGCCGATGCCATGAGCCATTTTGGAACTGCACGTGATTT AAGAGCGGGAATGCTGCAACGCGGTGTTAATATAGAATTAATTACGCCGTCTGTAAGCAACTTTAGAGTAGATATGCGTA CGCTTAAAATTGATGTTAATGTTGAAGAACCAGCTTTAGCACCAAGATACTGCGGTGTAACTATCTCAGGAATTACGGTT CAGGAATCTCCAAACTGGTTACAAGATCGCTTAAAAGCGATTGGTTTAACGCCAAAAAATAATATCGTTGACGTTACTAA TTATGTATTACATGAATTAGGACAGCCGCTTCATGCTTTTGATGCTGCAAAAATCAACGGTAAAGTAATCGTTAAAACAT TACCTGCAGGAACTAAGTTTACTACATTAGACGATGTTGAAAGAACTTTGCATGCAGAAGATTTAATGATCTGCGACGAA AAAGGACCGCTTTGTATTGCTGGTGTTTTTGGTGGAAAAAAATCAGGTGTTTCAGAAGGAACAACTGCTATTTTCTTAGA AAGTGCTTATTTTGATGCTGTAAGTGTTCGTAAAACCGCAAAAAGACATCAATTGAATACAGATGCTTCTTTTAGATTTG AAAGAGGAATTGACCCAACTATAACTGAGTATGCTTTAAAACGTGCTGCACTTTTAATTCAGGAAGTTGCTGGCGGAAAA ATTACTTCTGATGTTGTAGAAGTGTATCCTAAAAAAGTAGAAGATTTTTCTGTTTTATTAAATTTCAGCCACGTTTCTAA AATCATCGGACAGGAAATTCCGAAAGATACAATCAAAAAAATATTAGTTTCTTTAGATATTAAAGTAAACAGTGTTTCTG ACACTGGTTTAGGTTTAACTATTCCTGCATATCGTGTAGATGTACAGCGTGAAATTGATGTTATCGAAGAAATCTTAAGA GTTTACGGTTACAACAATATTGAGTTTTCTAAAAAATTCAATGCAACAGTAGCCAATTCTCCAAGAACTGAAGATTATAA AGTACAGAATGTTATTGCTTCTCAATTAAACTCACAAGGTTTTCATGAAATGATGGCAAACTCTTTAACAACAGCTGCGT ATGCTAAATTATCTACAGCTTTAAAAGAAGAACACAACGTTACGATGTTAAATCCTTTGAGCAGTGATTTATCAACAATG CGTCAGTCGTTATTGTTTTCAGCATTAGAAGCAGTTTCATACAACATTAACAGAAGAAATTCAGATTTAAAATTATTTGA ATTTGGAAAATCATACCATAAATACCTTAACGGTTACGAAGAGCACAAACATTTAACTTTATCTATCTCTGGAAACAGAA ACAAAGAAAGCTGGACAACTCCTCAAAAAGGAACAGATTTCTTTTTACTAAAAGGTTATGTGAAAGCTGTTTTGGCTCGT TTAGGAATTGAAAAAATTTCGAATGCTCCGGTTCAGTCAGATATTTTCTCTGAAGGAACTTCTATTTGCTACAACAATGA TACATTAGTTGAAATGGGAGTGGTTAAAAAATCAATCTTAAAGCATTTCGGAATTAAACAGGATGTATATTATGCTGATT TCAACTGGGATTTGGTTTTAAAAATCATTACCGGAAAAATTAAATATACAGAAATTCCTAAATATCCAGAAGTAAGAAGA GATTTAGCTTTGTTAATCGACGAAAAAACAACTTACGAAAGCATCTTTAATCTGGCTAGACAAACTGAAAAAACGCTTTT AAAAGACATCAATTTATTTGATGTTTACCAAGGAAATAAGCTTCCTGAAGGGAAAAAGTCGTATGCTTTGAGTTTCACTA TTCAGGACAATACAAAAACGCTTACAGATGCTCAAATCGATAAAATCATGTCGAAATTACAGCAGACCTTTGAAACTGAA TTAGGCGCAAGCTTAAGATAA
Upstream 100 bases:
>100_bases TTTCATAAATAAAACACAGTAAGAAAAAACCAAATAATTTCTTTCTTACTACAATTCTCAATTCTTATATTTGTATCCTC ATAAAAAGAATTAAACTAAA
Downstream 100 bases:
>100_bases TAGTTTTATCTATATAAATATTCAAACCCGACAGATTTTAAAACCTGTCGGGTTTTATTTTGTTTCATTTAGAATATTTC AAATAAGCACGCTGCAGTTT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 806; Mature: 806
Protein sequence:
>806_residues MKISYNWLKQFIKTDWTSEQTSELLTDLGLEVEVVEKYQSIKGGLEGVVVGHVLTCEKHPDADRLKVTTVNIGLEAPVQI VCGAANVAAGQKVPVATIGTVLYDKEGTEFTIKKGKIRGQDSHGMICAEDELGLGTSHDGIMVLDENLVPGTPASEVFQI ANDEVFEIGLTPNRADAMSHFGTARDLRAGMLQRGVNIELITPSVSNFRVDMRTLKIDVNVEEPALAPRYCGVTISGITV QESPNWLQDRLKAIGLTPKNNIVDVTNYVLHELGQPLHAFDAAKINGKVIVKTLPAGTKFTTLDDVERTLHAEDLMICDE KGPLCIAGVFGGKKSGVSEGTTAIFLESAYFDAVSVRKTAKRHQLNTDASFRFERGIDPTITEYALKRAALLIQEVAGGK ITSDVVEVYPKKVEDFSVLLNFSHVSKIIGQEIPKDTIKKILVSLDIKVNSVSDTGLGLTIPAYRVDVQREIDVIEEILR VYGYNNIEFSKKFNATVANSPRTEDYKVQNVIASQLNSQGFHEMMANSLTTAAYAKLSTALKEEHNVTMLNPLSSDLSTM RQSLLFSALEAVSYNINRRNSDLKLFEFGKSYHKYLNGYEEHKHLTLSISGNRNKESWTTPQKGTDFFLLKGYVKAVLAR LGIEKISNAPVQSDIFSEGTSICYNNDTLVEMGVVKKSILKHFGIKQDVYYADFNWDLVLKIITGKIKYTEIPKYPEVRR DLALLIDEKTTYESIFNLARQTEKTLLKDINLFDVYQGNKLPEGKKSYALSFTIQDNTKTLTDAQIDKIMSKLQQTFETE LGASLR
Sequences:
>Translated_806_residues MKISYNWLKQFIKTDWTSEQTSELLTDLGLEVEVVEKYQSIKGGLEGVVVGHVLTCEKHPDADRLKVTTVNIGLEAPVQI VCGAANVAAGQKVPVATIGTVLYDKEGTEFTIKKGKIRGQDSHGMICAEDELGLGTSHDGIMVLDENLVPGTPASEVFQI ANDEVFEIGLTPNRADAMSHFGTARDLRAGMLQRGVNIELITPSVSNFRVDMRTLKIDVNVEEPALAPRYCGVTISGITV QESPNWLQDRLKAIGLTPKNNIVDVTNYVLHELGQPLHAFDAAKINGKVIVKTLPAGTKFTTLDDVERTLHAEDLMICDE KGPLCIAGVFGGKKSGVSEGTTAIFLESAYFDAVSVRKTAKRHQLNTDASFRFERGIDPTITEYALKRAALLIQEVAGGK ITSDVVEVYPKKVEDFSVLLNFSHVSKIIGQEIPKDTIKKILVSLDIKVNSVSDTGLGLTIPAYRVDVQREIDVIEEILR VYGYNNIEFSKKFNATVANSPRTEDYKVQNVIASQLNSQGFHEMMANSLTTAAYAKLSTALKEEHNVTMLNPLSSDLSTM RQSLLFSALEAVSYNINRRNSDLKLFEFGKSYHKYLNGYEEHKHLTLSISGNRNKESWTTPQKGTDFFLLKGYVKAVLAR LGIEKISNAPVQSDIFSEGTSICYNNDTLVEMGVVKKSILKHFGIKQDVYYADFNWDLVLKIITGKIKYTEIPKYPEVRR DLALLIDEKTTYESIFNLARQTEKTLLKDINLFDVYQGNKLPEGKKSYALSFTIQDNTKTLTDAQIDKIMSKLQQTFETE LGASLR >Mature_806_residues MKISYNWLKQFIKTDWTSEQTSELLTDLGLEVEVVEKYQSIKGGLEGVVVGHVLTCEKHPDADRLKVTTVNIGLEAPVQI VCGAANVAAGQKVPVATIGTVLYDKEGTEFTIKKGKIRGQDSHGMICAEDELGLGTSHDGIMVLDENLVPGTPASEVFQI ANDEVFEIGLTPNRADAMSHFGTARDLRAGMLQRGVNIELITPSVSNFRVDMRTLKIDVNVEEPALAPRYCGVTISGITV QESPNWLQDRLKAIGLTPKNNIVDVTNYVLHELGQPLHAFDAAKINGKVIVKTLPAGTKFTTLDDVERTLHAEDLMICDE KGPLCIAGVFGGKKSGVSEGTTAIFLESAYFDAVSVRKTAKRHQLNTDASFRFERGIDPTITEYALKRAALLIQEVAGGK ITSDVVEVYPKKVEDFSVLLNFSHVSKIIGQEIPKDTIKKILVSLDIKVNSVSDTGLGLTIPAYRVDVQREIDVIEEILR VYGYNNIEFSKKFNATVANSPRTEDYKVQNVIASQLNSQGFHEMMANSLTTAAYAKLSTALKEEHNVTMLNPLSSDLSTM RQSLLFSALEAVSYNINRRNSDLKLFEFGKSYHKYLNGYEEHKHLTLSISGNRNKESWTTPQKGTDFFLLKGYVKAVLAR LGIEKISNAPVQSDIFSEGTSICYNNDTLVEMGVVKKSILKHFGIKQDVYYADFNWDLVLKIITGKIKYTEIPKYPEVRR DLALLIDEKTTYESIFNLARQTEKTLLKDINLFDVYQGNKLPEGKKSYALSFTIQDNTKTLTDAQIDKIMSKLQQTFETE LGASLR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=825, Percent_Identity=32.969696969697, Blast_Score=418, Evalue=1e-118,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 89513; Mature: 89513
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISYNWLKQFIKTDWTSEQTSELLTDLGLEVEVVEKYQSIKGGLEGVVVGHVLTCEKHP CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCC DADRLKVTTVNIGLEAPVQIVCGAANVAAGQKVPVATIGTVLYDKEGTEFTIKKGKIRGQ CCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHCEEEECCCCCEEEEECCEECCC DSHGMICAEDELGLGTSHDGIMVLDENLVPGTPASEVFQIANDEVFEIGLTPNRADAMSH CCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHH FGTARDLRAGMLQRGVNIELITPSVSNFRVDMRTLKIDVNVEEPALAPRYCGVTISGITV CCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE QESPNWLQDRLKAIGLTPKNNIVDVTNYVLHELGQPLHAFDAAKINGKVIVKTLPAGTKF ECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCEE TTLDDVERTLHAEDLMICDEKGPLCIAGVFGGKKSGVSEGTTAIFLESAYFDAVSVRKTA CCHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHH KRHQLNTDASFRFERGIDPTITEYALKRAALLIQEVAGGKITSDVVEVYPKKVEDFSVLL HHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHCCCHHHEE NFSHVSKIIGQEIPKDTIKKILVSLDIKVNSVSDTGLGLTIPAYRVDVQREIDVIEEILR EHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCCEEECCCEEECHHHHHHHHHHHHH VYGYNNIEFSKKFNATVANSPRTEDYKVQNVIASQLNSQGFHEMMANSLTTAAYAKLSTA HHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LKEEHNVTMLNPLSSDLSTMRQSLLFSALEAVSYNINRRNSDLKLFEFGKSYHKYLNGYE HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC EHKHLTLSISGNRNKESWTTPQKGTDFFLLKGYVKAVLARLGIEKISNAPVQSDIFSEGT CCCEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHCCCCCCHHHHHCCC SICYNNDTLVEMGVVKKSILKHFGIKQDVYYADFNWDLVLKIITGKIKYTEIPKYPEVRR CEEECCCCEEEHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEEEEECCCCHHHHH DLALLIDEKTTYESIFNLARQTEKTLLKDINLFDVYQGNKLPEGKKSYALSFTIQDNTKT HHHHEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEECCCCC LTDAQIDKIMSKLQQTFETELGASLR HHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKISYNWLKQFIKTDWTSEQTSELLTDLGLEVEVVEKYQSIKGGLEGVVVGHVLTCEKHP CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCC DADRLKVTTVNIGLEAPVQIVCGAANVAAGQKVPVATIGTVLYDKEGTEFTIKKGKIRGQ CCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHCEEEECCCCCEEEEECCEECCC DSHGMICAEDELGLGTSHDGIMVLDENLVPGTPASEVFQIANDEVFEIGLTPNRADAMSH CCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHH FGTARDLRAGMLQRGVNIELITPSVSNFRVDMRTLKIDVNVEEPALAPRYCGVTISGITV CCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE QESPNWLQDRLKAIGLTPKNNIVDVTNYVLHELGQPLHAFDAAKINGKVIVKTLPAGTKF ECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCEE TTLDDVERTLHAEDLMICDEKGPLCIAGVFGGKKSGVSEGTTAIFLESAYFDAVSVRKTA CCHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHH KRHQLNTDASFRFERGIDPTITEYALKRAALLIQEVAGGKITSDVVEVYPKKVEDFSVLL HHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHCCCHHHEE NFSHVSKIIGQEIPKDTIKKILVSLDIKVNSVSDTGLGLTIPAYRVDVQREIDVIEEILR EHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCCEEECCCEEECHHHHHHHHHHHHH VYGYNNIEFSKKFNATVANSPRTEDYKVQNVIASQLNSQGFHEMMANSLTTAAYAKLSTA HHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LKEEHNVTMLNPLSSDLSTMRQSLLFSALEAVSYNINRRNSDLKLFEFGKSYHKYLNGYE HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC EHKHLTLSISGNRNKESWTTPQKGTDFFLLKGYVKAVLARLGIEKISNAPVQSDIFSEGT CCCEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHCCCCCCHHHHHCCC SICYNNDTLVEMGVVKKSILKHFGIKQDVYYADFNWDLVLKIITGKIKYTEIPKYPEVRR CEEECCCCEEEHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEEEEECCCCHHHHH DLALLIDEKTTYESIFNLARQTEKTLLKDINLFDVYQGNKLPEGKKSYALSFTIQDNTKT HHHHEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEECCCCC LTDAQIDKIMSKLQQTFETELGASLR HHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA