| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146300472
Identifier: 146300472
GI number: 146300472
Start: 3245058
End: 3245783
Strand: Reverse
Name: 146300472
Synonym: Fjoh_2722
Alternate gene names: NA
Gene position: 3245783-3245058 (Counterclockwise)
Preceding gene: 146300473
Following gene: 146300471
Centisome position: 53.24
GC content: 33.61
Gene sequence:
>726_bases ATGAAATCAATCATTTTAAGAGAAATAAAATCCTTTTTTGGTTCTCCTATCGGCTACTTGGTCATTGCGATTTTCTTAAT CAGCAACGGGCTTTTTTTATGGGTATTTGAAGGAGACTACAATATATTGAATACAGGTTATGCTGATTTGACTCCGTTTT TCACTTTAACACCTTGGATTTTAATTTTTCTGATTCCGGCCGTTACAATGAGAAGTTTCTCTGATGAAAGAAAACAAGGA ACGCTGGAATTGCTTTTAACCAAACCTTTATCGATCTGGCAGATTGTAAACGGAAAATTTCTGGGATCATTTTTCCTTAT TATTTTAGCCATTATTCCAACCTTTATTTACGTAAAAGTAATTTCTAGTTTAGGTTCTCCGGAAGGTAATATCGATATGG GAAGCACAATTGGTTCTTATTTCGGATTGTTGTTTTTGATTGCTTCTTATTCTGCAATTGGAATCTTTACTTCTACTCTA TCAGAAAATCAAATCGTTGCCTTTATTATTGCCGTATTTATATGCTTTCTGTTTTATTTCGGTTTCGAAGGACTGGCTTC ATTAGTTCCGGGGCAATCAAATATCATTTCGGCATTTGGAATGCAGGATCATTTTAAAAGTATGAGCCGAGGCGTTATTG ATACCCGCGATGTAATTTACTTTTTAAGTATCAGCGTTTTGTTTTTATCTTTTACCGTTTATCAATTAAAATCTTTTAAA GCGTAA
Upstream 100 bases:
>100_bases AAATTAAATGGTTTTGATGAAACACGAAGTTCGCAAAGAAAGGAACTTCAAACCTGAAACTTGAAACCAAAAAAAATAAA TAAACGAATAAACGTTATAC
Downstream 100 bases:
>100_bases TGAAAGCATCTAATAAATTAAATCTTAAAACATTAGGCATTACAATTTTTATTTTAATTGTTTTAAATGTTCTTGGAAGC TTATTTTTTCATCGTTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Permease Protein; ABC Transporter Permease; ABC-2 Type Transport System Permease Protein; Gliding Motility Protein GldF; Protein Involved In Gliding Motility Gldf; ABC Transporter Inner Membrane Protein; ABC-Type Transport System; ABC-2 Type Transporter Superfamily; Permease Of ABC Transporter; Multi-Copper Maturation ABC Transporter Permease; Membrane Spanning Protein; Cytochrome C-Type Biogenesis Protein CcmB; ABC-2 Type Transport System Permease; ABC-Type Transport System Membrane Protein; ABC-2 Type Transporter Permease; Abc Transporter Permease Protein; ABC Transporter; ABC-2 Type Transporter Superfamily Protein; Protein Involved In Gliding Motility GldF; Gliding Motility ABC Transporter; ABC-Type Transport System Permease; ABC-Type Transport System Involved In Gliding Motility; ABC Transporter Auxiliary Component-Like Protein; CcmB Protein
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MKSIILREIKSFFGSPIGYLVIAIFLISNGLFLWVFEGDYNILNTGYADLTPFFTLTPWILIFLIPAVTMRSFSDERKQG TLELLLTKPLSIWQIVNGKFLGSFFLIILAIIPTFIYVKVISSLGSPEGNIDMGSTIGSYFGLLFLIASYSAIGIFTSTL SENQIVAFIIAVFICFLFYFGFEGLASLVPGQSNIISAFGMQDHFKSMSRGVIDTRDVIYFLSISVLFLSFTVYQLKSFK A
Sequences:
>Translated_241_residues MKSIILREIKSFFGSPIGYLVIAIFLISNGLFLWVFEGDYNILNTGYADLTPFFTLTPWILIFLIPAVTMRSFSDERKQG TLELLLTKPLSIWQIVNGKFLGSFFLIILAIIPTFIYVKVISSLGSPEGNIDMGSTIGSYFGLLFLIASYSAIGIFTSTL SENQIVAFIIAVFICFLFYFGFEGLASLVPGQSNIISAFGMQDHFKSMSRGVIDTRDVIYFLSISVLFLSFTVYQLKSFK A >Mature_241_residues MKSIILREIKSFFGSPIGYLVIAIFLISNGLFLWVFEGDYNILNTGYADLTPFFTLTPWILIFLIPAVTMRSFSDERKQG TLELLLTKPLSIWQIVNGKFLGSFFLIILAIIPTFIYVKVISSLGSPEGNIDMGSTIGSYFGLLFLIASYSAIGIFTSTL SENQIVAFIIAVFICFLFYFGFEGLASLVPGQSNIISAFGMQDHFKSMSRGVIDTRDVIYFLSISVLFLSFTVYQLKSFK A
Specific function: Unknown
COG id: COG1277
COG function: function code R; ABC-type transport system involved in multi-copper enzyme maturation, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26913; Mature: 26913
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIILREIKSFFGSPIGYLVIAIFLISNGLFLWVFEGDYNILNTGYADLTPFFTLTPWI CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEECCCCEECCCCHHHHHHHHHHHHH LIFLIPAVTMRSFSDERKQGTLELLLTKPLSIWQIVNGKFLGSFFLIILAIIPTFIYVKV HHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ISSLGSPEGNIDMGSTIGSYFGLLFLIASYSAIGIFTSTLSENQIVAFIIAVFICFLFYF HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GFEGLASLVPGQSNIISAFGMQDHFKSMSRGVIDTRDVIYFLSISVLFLSFTVYQLKSFK HHHHHHHHCCCCHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC A C >Mature Secondary Structure MKSIILREIKSFFGSPIGYLVIAIFLISNGLFLWVFEGDYNILNTGYADLTPFFTLTPWI CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEECCCCEECCCCHHHHHHHHHHHHH LIFLIPAVTMRSFSDERKQGTLELLLTKPLSIWQIVNGKFLGSFFLIILAIIPTFIYVKV HHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ISSLGSPEGNIDMGSTIGSYFGLLFLIASYSAIGIFTSTLSENQIVAFIIAVFICFLFYF HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GFEGLASLVPGQSNIISAFGMQDHFKSMSRGVIDTRDVIYFLSISVLFLSFTVYQLKSFK HHHHHHHHCCCCHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA