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The map label for this gene is xerC [H]

Identifier: 146300455

GI number: 146300455

Start: 3218085

End: 3219245

Strand: Reverse

Name: xerC [H]

Synonym: Fjoh_2705

Alternate gene names: 146300455

Gene position: 3219245-3218085 (Counterclockwise)

Preceding gene: 146300456

Following gene: 146300454

Centisome position: 52.8

GC content: 37.04

Gene sequence:

>1161_bases
ATGCAGGAGATTATGAAAAAGACTAATGTAACATTGAGAAAAAAGAAGATCGCAAATGGGAAATTATCACTTTATCTGGA
TTTTTATCCGCCGATCCAAAATGCAGAGACTAATGAGCTGACCAGACGTGAATTTCTTAAACTGTATCTGTTCGATAAAC
CTAAAGATCAGCTTGAGAAGATTGCAAACACAGAGAGCCTTCAAACTGCCCAGCTCATTCAGATCCGCAGGCAGAATGAA
CTGCGCAAGGACGACGTATATAATGAGTTTGAGAAAGAGCAATTGGAAATTCAAAGAATCAGCAGAGGCTCATTTTTGGA
GTATTTCAAAAAGATAAGAGATAAAAAAGTGGGAAAAAACCGTCTGATATGGGATACGGCCATTGTACATTTTGAAGCTT
TTTTAAAGGGAAATGACTTAACCTTTAAAGAAGTGACAGTGACCCTTATAGAAGATTATAAAGAATACTTATTAAAAGCG
AAAAACCGAAAAAATAACAGCAGCACCATCGCAAGAAACACTGCCCTTTCTTATCATAATAAACTAAAAACCACTCTCAA
AAATGCCTACAAAGAACAAAAACTAAGAACTGATATTAATGCAGGGATTGATTCTATAAAAGAGCAGGAATCCCAGCGTA
ATTTTTTAACTTTAAAAGAAGCCAAGAAATTATTCAGTACCCCATGTCCAAAAAGAATAGTGCACCAGATTTCAAAATTT
TCGGTATTGACAGGCCTTCGGTATTCCGATATTGCTAAACTCACCTGGGAAGAGATTATGTTTATAGAAGACGACGGTTA
TTACATACGATTCAAGCAAAAGAAGACAGAAGGCCTTCAGACCATTCCAATATCAAATGAAGCTTATGAAATACTTGCAG
AAAAGGCGCAGCCGGTAAAAACCGGGAAAGTTTTTTTCGATTTAAAAAAGTGGGATGTAGACAGGGCCCTGCCGGTATGG
ATTGCCAGGGCAGGTATTGTCAAACACATCACTTTTCATTGTTTCAGGCATACATATGCTACTCTTCAGATTGCTTCAGG
CACGGATATTTTTACAGTCTCCAAAATGATGGGTCACAAAAGCATCAAAACGACACAGATTTACACTAAAATCATTGATG
AGAAAAAACGGGAAGCAAGCCAGAGAATAACTTTGAAATAA

Upstream 100 bases:

>100_bases
GCAGGCGCACTTTATACGCTGATCCAGAGACACGGACTGGCTAAATATTCCATCGGAAAATTTAATTACGTGGCTAAAAG
AGATATCGATATTATATTTA

Downstream 100 bases:

>100_bases
TAAGGGACTGCCCAGACAAAAGCACTTCAAAAAAACGGCCGCTTTTTAAAATACCAAATTTGAAAAAATTAAAATTGTAA
GATGCAATAAGTTACTGTAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MQEIMKKTNVTLRKKKIANGKLSLYLDFYPPIQNAETNELTRREFLKLYLFDKPKDQLEKIANTESLQTAQLIQIRRQNE
LRKDDVYNEFEKEQLEIQRISRGSFLEYFKKIRDKKVGKNRLIWDTAIVHFEAFLKGNDLTFKEVTVTLIEDYKEYLLKA
KNRKNNSSTIARNTALSYHNKLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLFSTPCPKRIVHQISKF
SVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVKTGKVFFDLKKWDVDRALPVW
IARAGIVKHITFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKREASQRITLK

Sequences:

>Translated_386_residues
MQEIMKKTNVTLRKKKIANGKLSLYLDFYPPIQNAETNELTRREFLKLYLFDKPKDQLEKIANTESLQTAQLIQIRRQNE
LRKDDVYNEFEKEQLEIQRISRGSFLEYFKKIRDKKVGKNRLIWDTAIVHFEAFLKGNDLTFKEVTVTLIEDYKEYLLKA
KNRKNNSSTIARNTALSYHNKLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLFSTPCPKRIVHQISKF
SVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVKTGKVFFDLKKWDVDRALPVW
IARAGIVKHITFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKREASQRITLK
>Mature_386_residues
MQEIMKKTNVTLRKKKIANGKLSLYLDFYPPIQNAETNELTRREFLKLYLFDKPKDQLEKIANTESLQTAQLIQIRRQNE
LRKDDVYNEFEKEQLEIQRISRGSFLEYFKKIRDKKVGKNRLIWDTAIVHFEAFLKGNDLTFKEVTVTLIEDYKEYLLKA
KNRKNNSSTIARNTALSYHNKLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLFSTPCPKRIVHQISKF
SVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVKTGKVFFDLKKWDVDRALPVW
IARAGIVKHITFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKREASQRITLK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45371; Mature: 45371

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIMKKTNVTLRKKKIANGKLSLYLDFYPPIQNAETNELTRREFLKLYLFDKPKDQLEK
CHHHHHHHCCEEEEHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
IANTESLQTAQLIQIRRQNELRKDDVYNEFEKEQLEIQRISRGSFLEYFKKIRDKKVGKN
HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
RLIWDTAIVHFEAFLKGNDLTFKEVTVTLIEDYKEYLLKAKNRKNNSSTIARNTALSYHN
CEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLFSTPCPKRIVHQISKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCHHHHHHHHHHH
SVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVK
HHHHCCCHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCEEECCCCHHHHHHHHHCCCCC
TGKVFFDLKKWDVDRALPVWIARAGIVKHITFHCFRHTYATLQIASGTDIFTVSKMMGHK
CCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCC
SIKTTQIYTKIIDEKKREASQRITLK
CCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQEIMKKTNVTLRKKKIANGKLSLYLDFYPPIQNAETNELTRREFLKLYLFDKPKDQLEK
CHHHHHHHCCEEEEHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
IANTESLQTAQLIQIRRQNELRKDDVYNEFEKEQLEIQRISRGSFLEYFKKIRDKKVGKN
HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
RLIWDTAIVHFEAFLKGNDLTFKEVTVTLIEDYKEYLLKAKNRKNNSSTIARNTALSYHN
CEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLFSTPCPKRIVHQISKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCHHHHHHHHHHH
SVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVK
HHHHCCCHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCEEECCCCHHHHHHHHHCCCCC
TGKVFFDLKKWDVDRALPVWIARAGIVKHITFHCFRHTYATLQIASGTDIFTVSKMMGHK
CCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCC
SIKTTQIYTKIIDEKKREASQRITLK
CCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA