BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is yghA [H]

Identifier: 146300397

GI number: 146300397

Start: 3145111

End: 3146115

Strand: Reverse

Name: yghA [H]

Synonym: Fjoh_2643

Alternate gene names: 146300397

Gene position: 3146115-3145111 (Counterclockwise)

Preceding gene: 146300398

Following gene: 146300395

Centisome position: 51.6

GC content: 47.96

Gene sequence:

>1005_bases
ATGGAAAATAAAAATAATACAGCCCAAAACGCCGAAAAGACTGGTGTAGAATCACCACTTGGAGAAACAGCGTTAAATGA
TAAAAATAGAACCGATCTGGGAAATGAGAATATCAGCCGCTCGGCAGAAATACAAAATCCCACTACTAAATATGCGGCAC
CTCCCTTTAAAGAACAGACACAGCCATGGCCCGGTCTTGTCAGCAGAATGGATCCTAAGCCTGATCATGGAGAGAAGAGC
TACAAAGGAGCCGGCCGTCTGAAGAATCGCAAAGCACTTATAACCGGAGGGGATTCCGGTATGGGAAGGGCTGCAGCTAT
TGCCTACGCAAGAGAAGGCGCAGATGTTGCCATAAATTACTACCCGACTGAAGAACAAGACGCACAGGAAGTCATCCAGC
TGATAAAAGCTGCAGGAAGAAAGGCAGTAGCCATTCCGGGAGATCTGCGCGACGAGGAATTCTGCAAATCACTTGTCGAT
CAGGCGGCTGAAGCGCTCGGAGGCCTTGACATCGTAGTGAATAATGCCGCAAGACAGCAGACACATGAATCCATTCTGGA
TATTACTTCAGAGGAATTTGACTGGACAATGAAAACTAATATCTATGCTCCGTTTTGGATTATAAAAGCGGCGCTTCCCT
ATTTGAAGCCTGGATCCTCAATTATAGGTACCAGCTCAGTACAGGCTTATGCTCCTACGGAAGATTTATACGATTATGCC
CAGACCAAAGCAGCCACCACAAACTATATTAAATCTCTGGCAAAACAGTTAGGACCGAAAGGAATCAGGGTCAATGGAGT
GGCTCCTGGACCTGTATGGACGGCCCTGCAGGTAAGCGGCGGGGCGACAATGGAAAAACTTAAGAATTTTGGGTCGCAGA
CTCCTTTGGGAAGACCCGGCCAGCCCGCTGAATTGGCTTCAATTTATGTACAGCTGGCAGCTGAAGACGCCAGTTTTGCT
ACCGGACAGATCTACGGCTCAAGTGGCGGCGAGGGAAATCCGTAA

Upstream 100 bases:

>100_bases
TTGATATAAAAATGAAAAAAGAGCAATTACTTCTCTGTTGAAATTTGATTAATAATCAATGTGATAGAATAGATTTTTTA
ACCTCATAAATTAAATTATT

Downstream 100 bases:

>100_bases
AAAAACAGCAGCAATAATTGTTTTAAAATATTAAAACCCTCTGCAGTTGAGGCTCCAGAGGTTTTTTCTTTTATTTAAAT
CTTAATTCTATTTTTATAGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MENKNNTAQNAEKTGVESPLGETALNDKNRTDLGNENISRSAEIQNPTTKYAAPPFKEQTQPWPGLVSRMDPKPDHGEKS
YKGAGRLKNRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEQDAQEVIQLIKAAGRKAVAIPGDLRDEEFCKSLVD
QAAEALGGLDIVVNNAARQQTHESILDITSEEFDWTMKTNIYAPFWIIKAALPYLKPGSSIIGTSSVQAYAPTEDLYDYA
QTKAATTNYIKSLAKQLGPKGIRVNGVAPGPVWTALQVSGGATMEKLKNFGSQTPLGRPGQPAELASIYVQLAAEDASFA
TGQIYGSSGGEGNP

Sequences:

>Translated_334_residues
MENKNNTAQNAEKTGVESPLGETALNDKNRTDLGNENISRSAEIQNPTTKYAAPPFKEQTQPWPGLVSRMDPKPDHGEKS
YKGAGRLKNRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEQDAQEVIQLIKAAGRKAVAIPGDLRDEEFCKSLVD
QAAEALGGLDIVVNNAARQQTHESILDITSEEFDWTMKTNIYAPFWIIKAALPYLKPGSSIIGTSSVQAYAPTEDLYDYA
QTKAATTNYIKSLAKQLGPKGIRVNGVAPGPVWTALQVSGGATMEKLKNFGSQTPLGRPGQPAELASIYVQLAAEDASFA
TGQIYGSSGGEGNP
>Mature_334_residues
MENKNNTAQNAEKTGVESPLGETALNDKNRTDLGNENISRSAEIQNPTTKYAAPPFKEQTQPWPGLVSRMDPKPDHGEKS
YKGAGRLKNRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEQDAQEVIQLIKAAGRKAVAIPGDLRDEEFCKSLVD
QAAEALGGLDIVVNNAARQQTHESILDITSEEFDWTMKTNIYAPFWIIKAALPYLKPGSSIIGTSSVQAYAPTEDLYDYA
QTKAATTNYIKSLAKQLGPKGIRVNGVAPGPVWTALQVSGGATMEKLKNFGSQTPLGRPGQPAELASIYVQLAAEDASFA
TGQIYGSSGGEGNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.7073170731707, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI5031737, Length=240, Percent_Identity=31.25, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=34.5360824742268, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=32.8125, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=28.515625, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=28.8973384030418, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=30.6451612903226, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=28.1853281853282, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40254986, Length=137, Percent_Identity=32.8467153284672, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=34.8623853211009, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=26.6129032258064, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=29.5336787564767, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=27.6859504132231, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1789378, Length=290, Percent_Identity=57.2413793103448, Blast_Score=347, Evalue=6e-97,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=34.2629482071713, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=30, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.1124497991968, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=30.5220883534137, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=28.0487804878049, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=29.3388429752066, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=28.8617886178862, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=25.2032520325203, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=27.7992277992278, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=28.6852589641434, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=30.3149606299213, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=29.5719844357977, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.0756972111554, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=32.319391634981, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=32.824427480916, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=30.6451612903226, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=31.0606060606061, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=248, Percent_Identity=31.4516129032258, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=31.8181818181818, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=32.4324324324324, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.7709923664122, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=32.046332046332, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=256, Percent_Identity=28.90625, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=29.5019157088123, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.203007518797, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=30.6818181818182, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.5970149253731, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=29.4573643410853, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=267, Percent_Identity=30.7116104868914, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=31.4176245210728, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=30.3030303030303, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=28.3400809716599, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=28.6290322580645, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=26.2948207171315, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=29.6577946768061, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=28.0769230769231, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=29.0155440414508, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=28.996282527881, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=26.9076305220884, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=225, Percent_Identity=28.4444444444444, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=31.3492063492063, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21357041, Length=241, Percent_Identity=30.2904564315353, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24644339, Length=238, Percent_Identity=31.9327731092437, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28571526, Length=241, Percent_Identity=31.1203319502075, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.8804780876494, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644337, Length=229, Percent_Identity=32.3144104803493, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=27.6679841897233, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=237, Percent_Identity=27.4261603375527, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24640492, Length=173, Percent_Identity=30.0578034682081, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=28.9795918367347, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35694; Mature: 35694

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKNNTAQNAEKTGVESPLGETALNDKNRTDLGNENISRSAEIQNPTTKYAAPPFKEQT
CCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
QPWPGLVSRMDPKPDHGEKSYKGAGRLKNRKALITGGDSGMGRAAAIAYAREGADVAINY
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEE
YPTEEQDAQEVIQLIKAAGRKAVAIPGDLRDEEFCKSLVDQAAEALGGLDIVVNNAARQQ
CCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHH
THESILDITSEEFDWTMKTNIYAPFWIIKAALPYLKPGSSIIGTSSVQAYAPTEDLYDYA
HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHH
QTKAATTNYIKSLAKQLGPKGIRVNGVAPGPVWTALQVSGGATMEKLKNFGSQTPLGRPG
HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCC
QPAELASIYVQLAAEDASFATGQIYGSSGGEGNP
CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MENKNNTAQNAEKTGVESPLGETALNDKNRTDLGNENISRSAEIQNPTTKYAAPPFKEQT
CCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
QPWPGLVSRMDPKPDHGEKSYKGAGRLKNRKALITGGDSGMGRAAAIAYAREGADVAINY
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEE
YPTEEQDAQEVIQLIKAAGRKAVAIPGDLRDEEFCKSLVDQAAEALGGLDIVVNNAARQQ
CCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHH
THESILDITSEEFDWTMKTNIYAPFWIIKAALPYLKPGSSIIGTSSVQAYAPTEDLYDYA
HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHH
QTKAATTNYIKSLAKQLGPKGIRVNGVAPGPVWTALQVSGGATMEKLKNFGSQTPLGRPG
HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCC
QPAELASIYVQLAAEDASFATGQIYGSSGGEGNP
CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]