| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is pfeA [H]
Identifier: 146300221
GI number: 146300221
Start: 2950996
End: 2953659
Strand: Reverse
Name: pfeA [H]
Synonym: Fjoh_2466
Alternate gene names: 146300221
Gene position: 2953659-2950996 (Counterclockwise)
Preceding gene: 146300232
Following gene: 146300218
Centisome position: 48.45
GC content: 37.46
Gene sequence:
>2664_bases ATGAAAAAGATTGCATTATTTTTATTGATGCTGAATTCAGCATTTCTTTTTGCGCAGAAAGAAGTATCGGGTGTCGTTAG AGACAAAGCAGGTTCACCGCTTCCTGGAGTTAATATTGTTGAAAAAGGAACTTCAAATGGTGTCTCAACCGATTTTGAAG GAGGATTTAAAATTAAAGTAAAAGAAGGAGCAGTATTAATTTTCAGTTATGTTGGTTTTGCTTCAATCGAAAAAGCAGCT TCAGATAAAATGAATATCACTTTAGATGAAAGCGGCGGACAGGTTTTGAGTGACGTTGTAGTAGTAGGTTCCAGAAATAC CAAAAGAACCGTTGTAAACTCTGCCGTACCTATTGATGTTATTAACGTAAAAGAGGTTACAACACAAAGCGGAAAAATCG AAATCAATCAATTACTGCAGTATGTAGCACCTTCATTTAATGCCAATAAACAATCGGGTTCTGATGGTGCCGACCACGTT GATCCTGCTTCATTAAGAGGAATGGGACCTGACCAGACTTTAGTTTTAATTAATGGAAAAAGAAGACACCAATCATCTTT AATTAATTTATTTGGAACTCGCGGACGTGGAAATACTGGTACCGACTTAAATGCAATTCCGGCAGCTTCTATTAAAAGAA TCGAAATTCTGCGTGACGGCGCAGCAGCTCAATACGGTTCTGATGCAATTGCAGGTGTTATCAATATCGTTACCAATGAT AATGTAAACGAACTTACAGGTTCTGTTACGTATGGAGTTTTTAACACAAATGCAAAAGGCGATTTCCTGCCTGGAACTCC AAACACAAAAGGATATAGATTAGATCAGCATGGAAACGGAAATTCATACGGAAAAGATCAGGATTTTGACGGAGGTTCTG TAAGAGTTGCCGCCAATTATGGTGTTGCATTAGGAACAAAAGGCGGTTATGCCAATTTTACGGGAGAATTTTTAAACAAA AATAAAACCCTGAGACCAGCCTACGATTTTAGAAAAGGTTTTGGCGATGCCGAAATGCAGGGCGTTAATCTCTTTGTTAA TCTTGCTGTTCCAATTGCTGACAAAACTGAATTTTATGCTTTTGGAGGAAGCAATTTTAGAGATACTGATGCGTATGCTT TTACCAGAAATGATGGCGAAAGAGTCGTAGAATCAGTTTATCCGGGAGGTTACACACCAAGAATTACTTCAAAAATTAAT GACAACTCGGTTGCTGCAGGAATTAGAACAGAATCTGGCGGAGGATGGAAATTTGATTTAAGCAACACTTTTGGAAAAAA TAAATTTCAATACGATATTAAAGGAACTATAAATGCTTCTCTTGAGGAAAAATCTCCACATGAATTTGACGCTGGAGGTC ACAGTTTACTTCAAAACACAACTAATTTTGACATTTCTAAAAACTATGACAGCGTTCTTAGCGGTTTCAACATCGCATTT GGAACCGAATTTAGAGTTGAACAGTTTAAGATTTTTGCCGGCGAAGAAGGCTCTTATGCTACTTATGACACAAACGGACA GCCAATAACCGATCCAACGACTCAAAGTCCGCCAACAGTTCCTAATCCTGATTACGATCCTTCAGATCCTACTTCGTCAC CAACAATTCCAAGACCAGGCGGTTCGCAAGGTTTTCCAGGATACAGTCCTGCCAATGAGGTTAATAAAAACCGTACAAAC TTCTCTTTGTATGCAGATGGAGAATTGGATATTACAGAGGCTTTAATGGTAAGTGGAGCAGTTCGTTTTGAAAATTACAG CGATTTTGGAAGCACCGTAAACGGAAAATTAGCATCAAGATTAAAAATAAACAAACATATTAATTTAAGAGGATCTGTAA GTACTGGTTTCCGTGCGCCTTCATTAGCGCAGATTTATTACAATTTACGTTTCACCAACTTTAACGCAAGCGGTGCGACC GAAGTTTTACTGGCTCCAAATGACAGTGAAGTTACAAGAGCTTTTGGGATCAGCAAGTTAAACGAAGAAAAAGCAGTTAA TGCTTCTTTAGGTTTTACAGCTTCTTTTGGAGATTTTACTGCAACTGTCGACGGTTACTATATTAAGGTAAAAGACCGTA TTGTACTTACTGGATATTTTGATGCTGAGTCTTTAAACTTAGGCGTTTCAGAAGCACAGTTTTTTGCTAACGGAGTTGAC ACAAGCACACATGGTTTAGATTTGGTTTTATCCTGGAAAAAAGCATTTGATTTTGGTCAATTGAACGCCACTTTGGTAGG AAATATAAATGACATGAAAATTGACAAAGTAAAAAATGGTCCTCTGGACGAAGCTACTTTCTTTGGTAAAAGAGAAAAAG CCTTTTTACTAGCCTCTGCACCTGATAACAAATTTGCTTTAAATTTAAATTATGCCAAAAATAAATTCGATGCAGGATTA GCTTTTACCCGTTTCAGCAAAGTAGTTTTAGTTGATTATGCCGATGAAGATGATGTTTACAATCCAAGATTGGTTACAGA TTTGACTTTGGGTTATCAATTAAGCAAAAGTTTAAAACTAAGCATTGGAAGCAACAACTTATTTAATGTATACCCAACGA AACAAGATGAACAAGGAAATACTGAAGCCGGAGGTTATTGGGACGCTGTACAAATGGGCTTCAGCGGTGCATATTACTAT GCCAGACTTGGATTTAATTTCTAA
Upstream 100 bases:
>100_bases GCTATTCTTAAAAATTTTTAAACTTTTTATAAAGTTTTTGTAAAATAATAGTAATTTTATAAAAATTTCCAACAAAAAAC AAACCAAAAAACCAATAACC
Downstream 100 bases:
>100_bases GTTTCTCACAAAGCTTATGAATTGCTCAGCCTGACAATACAATTTACATACACCCTAAAACAAAAAATCCTGAACTATTG TTCAGGATTTTTTTATATCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 887; Mature: 887
Protein sequence:
>887_residues MKKIALFLLMLNSAFLFAQKEVSGVVRDKAGSPLPGVNIVEKGTSNGVSTDFEGGFKIKVKEGAVLIFSYVGFASIEKAA SDKMNITLDESGGQVLSDVVVVGSRNTKRTVVNSAVPIDVINVKEVTTQSGKIEINQLLQYVAPSFNANKQSGSDGADHV DPASLRGMGPDQTLVLINGKRRHQSSLINLFGTRGRGNTGTDLNAIPAASIKRIEILRDGAAAQYGSDAIAGVINIVTND NVNELTGSVTYGVFNTNAKGDFLPGTPNTKGYRLDQHGNGNSYGKDQDFDGGSVRVAANYGVALGTKGGYANFTGEFLNK NKTLRPAYDFRKGFGDAEMQGVNLFVNLAVPIADKTEFYAFGGSNFRDTDAYAFTRNDGERVVESVYPGGYTPRITSKIN DNSVAAGIRTESGGGWKFDLSNTFGKNKFQYDIKGTINASLEEKSPHEFDAGGHSLLQNTTNFDISKNYDSVLSGFNIAF GTEFRVEQFKIFAGEEGSYATYDTNGQPITDPTTQSPPTVPNPDYDPSDPTSSPTIPRPGGSQGFPGYSPANEVNKNRTN FSLYADGELDITEALMVSGAVRFENYSDFGSTVNGKLASRLKINKHINLRGSVSTGFRAPSLAQIYYNLRFTNFNASGAT EVLLAPNDSEVTRAFGISKLNEEKAVNASLGFTASFGDFTATVDGYYIKVKDRIVLTGYFDAESLNLGVSEAQFFANGVD TSTHGLDLVLSWKKAFDFGQLNATLVGNINDMKIDKVKNGPLDEATFFGKREKAFLLASAPDNKFALNLNYAKNKFDAGL AFTRFSKVVLVDYADEDDVYNPRLVTDLTLGYQLSKSLKLSIGSNNLFNVYPTKQDEQGNTEAGGYWDAVQMGFSGAYYY ARLGFNF
Sequences:
>Translated_887_residues MKKIALFLLMLNSAFLFAQKEVSGVVRDKAGSPLPGVNIVEKGTSNGVSTDFEGGFKIKVKEGAVLIFSYVGFASIEKAA SDKMNITLDESGGQVLSDVVVVGSRNTKRTVVNSAVPIDVINVKEVTTQSGKIEINQLLQYVAPSFNANKQSGSDGADHV DPASLRGMGPDQTLVLINGKRRHQSSLINLFGTRGRGNTGTDLNAIPAASIKRIEILRDGAAAQYGSDAIAGVINIVTND NVNELTGSVTYGVFNTNAKGDFLPGTPNTKGYRLDQHGNGNSYGKDQDFDGGSVRVAANYGVALGTKGGYANFTGEFLNK NKTLRPAYDFRKGFGDAEMQGVNLFVNLAVPIADKTEFYAFGGSNFRDTDAYAFTRNDGERVVESVYPGGYTPRITSKIN DNSVAAGIRTESGGGWKFDLSNTFGKNKFQYDIKGTINASLEEKSPHEFDAGGHSLLQNTTNFDISKNYDSVLSGFNIAF GTEFRVEQFKIFAGEEGSYATYDTNGQPITDPTTQSPPTVPNPDYDPSDPTSSPTIPRPGGSQGFPGYSPANEVNKNRTN FSLYADGELDITEALMVSGAVRFENYSDFGSTVNGKLASRLKINKHINLRGSVSTGFRAPSLAQIYYNLRFTNFNASGAT EVLLAPNDSEVTRAFGISKLNEEKAVNASLGFTASFGDFTATVDGYYIKVKDRIVLTGYFDAESLNLGVSEAQFFANGVD TSTHGLDLVLSWKKAFDFGQLNATLVGNINDMKIDKVKNGPLDEATFFGKREKAFLLASAPDNKFALNLNYAKNKFDAGL AFTRFSKVVLVDYADEDDVYNPRLVTDLTLGYQLSKSLKLSIGSNNLFNVYPTKQDEQGNTEAGGYWDAVQMGFSGAYYY ARLGFNF >Mature_887_residues MKKIALFLLMLNSAFLFAQKEVSGVVRDKAGSPLPGVNIVEKGTSNGVSTDFEGGFKIKVKEGAVLIFSYVGFASIEKAA SDKMNITLDESGGQVLSDVVVVGSRNTKRTVVNSAVPIDVINVKEVTTQSGKIEINQLLQYVAPSFNANKQSGSDGADHV DPASLRGMGPDQTLVLINGKRRHQSSLINLFGTRGRGNTGTDLNAIPAASIKRIEILRDGAAAQYGSDAIAGVINIVTND NVNELTGSVTYGVFNTNAKGDFLPGTPNTKGYRLDQHGNGNSYGKDQDFDGGSVRVAANYGVALGTKGGYANFTGEFLNK NKTLRPAYDFRKGFGDAEMQGVNLFVNLAVPIADKTEFYAFGGSNFRDTDAYAFTRNDGERVVESVYPGGYTPRITSKIN DNSVAAGIRTESGGGWKFDLSNTFGKNKFQYDIKGTINASLEEKSPHEFDAGGHSLLQNTTNFDISKNYDSVLSGFNIAF GTEFRVEQFKIFAGEEGSYATYDTNGQPITDPTTQSPPTVPNPDYDPSDPTSSPTIPRPGGSQGFPGYSPANEVNKNRTN FSLYADGELDITEALMVSGAVRFENYSDFGSTVNGKLASRLKINKHINLRGSVSTGFRAPSLAQIYYNLRFTNFNASGAT EVLLAPNDSEVTRAFGISKLNEEKAVNASLGFTASFGDFTATVDGYYIKVKDRIVLTGYFDAESLNLGVSEAQFFANGVD TSTHGLDLVLSWKKAFDFGQLNATLVGNINDMKIDKVKNGPLDEATFFGKREKAFLLASAPDNKFALNLNYAKNKFDAGL AFTRFSKVVLVDYADEDDVYNPRLVTDLTLGYQLSKSLKLSIGSNNLFNVYPTKQDEQGNTEAGGYWDAVQMGFSGAYYY ARLGFNF
Specific function: Specific receptor for the siderophore ferric enterobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786798, Length=133, Percent_Identity=33.8345864661654, Blast_Score=70, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95864; Mature: 95864
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIALFLLMLNSAFLFAQKEVSGVVRDKAGSPLPGVNIVEKGTSNGVSTDFEGGFKIKV CCHHHEEHHHHHCHHEEEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEE KEGAVLIFSYVGFASIEKAASDKMNITLDESGGQVLSDVVVVGSRNTKRTVVNSAVPIDV ECCCEEEEEHHCHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECCCCCEEE INVKEVTTQSGKIEINQLLQYVAPSFNANKQSGSDGADHVDPASLRGMGPDQTLVLINGK EECHHEECCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECC RRHQSSLINLFGTRGRGNTGTDLNAIPAASIKRIEILRDGAAAQYGSDAIAGVINIVTND CHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC NVNELTGSVTYGVFNTNAKGDFLPGTPNTKGYRLDQHGNGNSYGKDQDFDGGSVRVAANY CHHHHCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEC GVALGTKGGYANFTGEFLNKNKTLRPAYDFRKGFGDAEMQGVNLFVNLAVPIADKTEFYA CEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEE FGGSNFRDTDAYAFTRNDGERVVESVYPGGYTPRITSKINDNSVAAGIRTESGGGWKFDL ECCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEC SNTFGKNKFQYDIKGTINASLEEKSPHEFDAGGHSLLQNTTNFDISKNYDSVLSGFNIAF CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCCEEEE GTEFRVEQFKIFAGEEGSYATYDTNGQPITDPTTQSPPTVPNPDYDPSDPTSSPTIPRPG CCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSQGFPGYSPANEVNKNRTNFSLYADGELDITEALMVSGAVRFENYSDFGSTVNGKLASR CCCCCCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCEEEECCCHHCCCCCCCCEEEE LKINKHINLRGSVSTGFRAPSLAQIYYNLRFTNFNASGATEVLLAPNDSEVTRAFGISKL EEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHCCCCC NEEKAVNASLGFTASFGDFTATVDGYYIKVKDRIVLTGYFDAESLNLGVSEAQFFANGVD CCCCCCCCCCCEEEECCCEEEEECCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCC TSTHGLDLVLSWKKAFDFGQLNATLVGNINDMKIDKVKNGPLDEATFFGKREKAFLLASA CCCCCEEEEEEEHHHCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHCCCCCCEEEEEEC PDNKFALNLNYAKNKFDAGLAFTRFSKVVLVDYADEDDVYNPRLVTDLTLGYQLSKSLKL CCCEEEEEEECCCCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEEEEECEEECCEEEE SIGSNNLFNVYPTKQDEQGNTEAGGYWDAVQMGFSGAYYYARLGFNF EECCCCEEEECCCCCCCCCCCCCCCEEHHHHHCCCCEEEEEEECCCC >Mature Secondary Structure MKKIALFLLMLNSAFLFAQKEVSGVVRDKAGSPLPGVNIVEKGTSNGVSTDFEGGFKIKV CCHHHEEHHHHHCHHEEEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEE KEGAVLIFSYVGFASIEKAASDKMNITLDESGGQVLSDVVVVGSRNTKRTVVNSAVPIDV ECCCEEEEEHHCHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECCCCCEEE INVKEVTTQSGKIEINQLLQYVAPSFNANKQSGSDGADHVDPASLRGMGPDQTLVLINGK EECHHEECCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECC RRHQSSLINLFGTRGRGNTGTDLNAIPAASIKRIEILRDGAAAQYGSDAIAGVINIVTND CHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC NVNELTGSVTYGVFNTNAKGDFLPGTPNTKGYRLDQHGNGNSYGKDQDFDGGSVRVAANY CHHHHCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEC GVALGTKGGYANFTGEFLNKNKTLRPAYDFRKGFGDAEMQGVNLFVNLAVPIADKTEFYA CEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEE FGGSNFRDTDAYAFTRNDGERVVESVYPGGYTPRITSKINDNSVAAGIRTESGGGWKFDL ECCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEC SNTFGKNKFQYDIKGTINASLEEKSPHEFDAGGHSLLQNTTNFDISKNYDSVLSGFNIAF CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCCEEEE GTEFRVEQFKIFAGEEGSYATYDTNGQPITDPTTQSPPTVPNPDYDPSDPTSSPTIPRPG CCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSQGFPGYSPANEVNKNRTNFSLYADGELDITEALMVSGAVRFENYSDFGSTVNGKLASR CCCCCCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCEEEECCCHHCCCCCCCCEEEE LKINKHINLRGSVSTGFRAPSLAQIYYNLRFTNFNASGATEVLLAPNDSEVTRAFGISKL EEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHCCCCC NEEKAVNASLGFTASFGDFTATVDGYYIKVKDRIVLTGYFDAESLNLGVSEAQFFANGVD CCCCCCCCCCCEEEECCCEEEEECCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCC TSTHGLDLVLSWKKAFDFGQLNATLVGNINDMKIDKVKNGPLDEATFFGKREKAFLLASA CCCCCEEEEEEEHHHCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHCCCCCCEEEEEEC PDNKFALNLNYAKNKFDAGLAFTRFSKVVLVDYADEDDVYNPRLVTDLTLGYQLSKSLKL CCCEEEEEEECCCCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEEEEECEEECCEEEE SIGSNNLFNVYPTKQDEQGNTEAGGYWDAVQMGFSGAYYYARLGFNF EECCCCEEEECCCCCCCCCCCCCCCEEHHHHHCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419284; 10984043 [H]