| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300211
Identifier: 146300211
GI number: 146300211
Start: 2940278
End: 2943052
Strand: Reverse
Name: 146300211
Synonym: Fjoh_2456
Alternate gene names: NA
Gene position: 2943052-2940278 (Counterclockwise)
Preceding gene: 146300212
Following gene: 146300209
Centisome position: 48.27
GC content: 38.77
Gene sequence:
>2775_bases ATGTCTAAAAGCTCTATGAAATTACGTTATGTAATGGCATTAGCCTGCCTTACAATGACATTTACTGCACTTTTTGCACA AAACCCTGTAGTAAAAATTGATTTTGACCAATCCGGCCGACCAAAAGCCGAAGTCAACGAACCTGATTACACCGCTTGGG TAATAGGATCAGGAAACACCAGCACTTATACTGAAAATGGAGTAACTTTTACGGTTACGAGAGTCGGAAATAACGGAGAT GCCCTGGGAACCAACTGGTATAAAGCCGGAATACAGGCACCTTATTATGCCCGATTAGTCTGCGACGGACTCACAGTAAA AGGAAACACCGCTAATCTGGGTGCTCAAATTGAACTTAGAATATCAGGACTAGCTCCCGGACAGCACACTTTATTAGCTT TTTTTAATGCTGTAGATAGTCCAACAACCAACACCTTTAGCCCAATTGACATTTCTATAGACGGCAGCTTAGTAGTCGAT AATTTAATTCCTAGTGTAAGAGCCACAAAAACAGCCGATGCTAAATCTACCTATTTGAAATTTCAGGCAAATACGGATAC CGATGTAGTTTTCTTATTTGCTGCTGAAACTTCAGGAACTGAAAATGTAAAAAACTTTATTTTAAATGGTTTCGAATTAA ATACTCCAAACATTTTTTATCAGGCAACAAATCCTTCGCCAAAACATAACGATGAGCATATTGAATTAACTTCAAAAAAT CGGGTTTTAGGATGGACAGCTGCTGCAAATGCTTTATCGCACAATGTTTATTTTGGAACAGATCCTGCAGCTGTTGAGGC TGCCACAACATCATCACCGGAATATAAAGGAAATCAAAGTTTAGCCAATACCACTTTTCAGGTTAACGGACTTTATACCG GAGCAACTTATTATTGGAGAATTGACGAAGTTTTAGCTAACAATGCAGTAGAAAAAGGCAATTTATGGCGTTTTCGTCCT GCACAGCTTGCTTTTCCTGATGCAGAAGGTTACGGACGTTTTGCACGAGGCGGAAGAGGCGGAAAAGTCATTGCCGTAAC CAATTTAAACGACAGCGGTCCGGGAAGTTTACGCGAAGCCGTAACCAATGACATTGGTCCAAGAACAATTGTATTTAATA CTTCGGGAATTATTCAGCTTACTTCACGTTTGGTTTTAAGCCAGCCTTATGTAACGGTTGCCGGTCAGACTGCTCCGGGA AAAGGTATTTGTATAAAATCAGCTCCTTTTGGCGTGACCGGAAATGATGCAGTAGTTCAAAATATTCGTGTTCGTGTTGG CGGCGGTCCTACTTTTGACGGAATGGGTTTAACCGGAGCAGATCACAGTATAATAGATCACTGCTCAATAAGCTGGACAA TCGACGAAGCTTTCAGTTCCCGTTCTGGCAAAAACATTACTTTGCAAAGAACCTTAATATCTGAAGCATTAAATGCCGCT GGTCATCAAAATTATCCTGCCGGAACAGAACATGGTTATGCCGCTACCATAGGAGGTGACATTGGAAGTTTTCATCATAA TCTTTTAGCGCACTGCTACGGCCGTAACTGGAGTTTAGGAGGCGGACTTGACGGAAGCGGTGCTTATACTGGAAAAATGG ACATTACAAACAATGTTGTTTATAATTGGGGAAGCAGAACAACTGACGGCGGTACTAAAGAAGTAAATTTTGTAAACAAC TATTATAAACCTGGTGCCGGATCAAAAATATTTGTGGCGTTTAACCAGCAAAATGAAGGCGTAGGAACCGGAATGCAGCA ATGTTATTTTAACGGGAATGTAATGCCCGGCTATTTTGATGAAAGCAGTCAGACTGCAGGAAGAAAAGCTTCCGGAATAA CAGTTTCTTACGAAAATTTTGTAAACACACCGTTTTTTCCTTCTTATGTAACTACACAATCAGCTAAAAATGCCTATAAA ATTGTTCTTTCAGATGTAGGATGTGTTCAGCCTGAATTTGACGAACACGATCAAAGAATAATCTCTGAAACCTTAAACGG AACATATTCAATAAGAGGAAGCGTAACTAACAAACCCGGATTTCCGGATAATGAAGCAGATGTTGGCGGTTATGAAGATT ATCCGGTTGTAAATAGAAATGAAGATTGGGACACTGATCAGGACGGACTGCCAAATTGGTGGGAAAATATCATTGGCACC AATGTAAACTCTGCAACAGGTGATTTCTCAGATTCAAATGCCGATGCTGATCAGGACGGTTATACTAATCTTGACAATTA TTTACAATGGATGTCCCTGCCTCATTACGAATCGACAGACGGAAATAAAATTGATATTAATATTCAAAAACTATCCAGAG GATTTACCAGCGGTGTTTCATACAGCATTTCAGATATAGTAAACGGAAATGCCGTATTAAATACAGATACTGTTGCATTT ACTCCATCTGCCAAAGGATTAGCTTCTTTTAACTTTACAGTAATCGATTCTGAAGGCGGTACAATGACCAGAAAAGTAAA TATCCTAAGCGGCTATTCTACCTTATCTGTAAAAGAAAATAATAAAGAAACTGCCGACAGTTTTAAAGTCTGGCCGGTGC CAACTAACGGGAATTTTTCTGTTTTGCTAGATAATGAAATTGAAAAAGCAGATCTTAAAATTTATGATGTTTTAGGAAAA GAAGTTCAAAAACGCAACATAAATGGAAAAACTACAGAAAATATTCATCTTCGAGAAAAAGGTGTTTATATCTTAAAAGT TTCCAATCCAAATAATAAAAAAGTACTACACGTTAAAAAAATTATAGTACAGTAA
Upstream 100 bases:
>100_bases CGTAATATCTAACCAATATTACCATTTTCAGCCATTTAGAAAACAAATAATTTTATGACAAAGAGTAACCTAGATTTTAC TTAACTAACCTAAAAACATT
Downstream 100 bases:
>100_bases AACAAAAAGGCCTTTTCATTAATTGAAAAGGCCTTCTTTTATATTCAAACTCTAAAATGAGTCATTGTTTTCTCTTTGAA AAAAATAAGTATAAATCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: Pectinesterase; Pectate Lyase Protein; Polysaccharide Lyase Family; Fibronectin Type III Domain-Containing Protein; 50S Ribosomal Protein L; Pectate Lyase/Amb Allergen; Ricin B Lectin; Pectate Lysase; Outer Membrane Adhesin Like Proteiin; PKD Domain Containing Protein
Number of amino acids: Translated: 924; Mature: 923
Protein sequence:
>924_residues MSKSSMKLRYVMALACLTMTFTALFAQNPVVKIDFDQSGRPKAEVNEPDYTAWVIGSGNTSTYTENGVTFTVTRVGNNGD ALGTNWYKAGIQAPYYARLVCDGLTVKGNTANLGAQIELRISGLAPGQHTLLAFFNAVDSPTTNTFSPIDISIDGSLVVD NLIPSVRATKTADAKSTYLKFQANTDTDVVFLFAAETSGTENVKNFILNGFELNTPNIFYQATNPSPKHNDEHIELTSKN RVLGWTAAANALSHNVYFGTDPAAVEAATTSSPEYKGNQSLANTTFQVNGLYTGATYYWRIDEVLANNAVEKGNLWRFRP AQLAFPDAEGYGRFARGGRGGKVIAVTNLNDSGPGSLREAVTNDIGPRTIVFNTSGIIQLTSRLVLSQPYVTVAGQTAPG KGICIKSAPFGVTGNDAVVQNIRVRVGGGPTFDGMGLTGADHSIIDHCSISWTIDEAFSSRSGKNITLQRTLISEALNAA GHQNYPAGTEHGYAATIGGDIGSFHHNLLAHCYGRNWSLGGGLDGSGAYTGKMDITNNVVYNWGSRTTDGGTKEVNFVNN YYKPGAGSKIFVAFNQQNEGVGTGMQQCYFNGNVMPGYFDESSQTAGRKASGITVSYENFVNTPFFPSYVTTQSAKNAYK IVLSDVGCVQPEFDEHDQRIISETLNGTYSIRGSVTNKPGFPDNEADVGGYEDYPVVNRNEDWDTDQDGLPNWWENIIGT NVNSATGDFSDSNADADQDGYTNLDNYLQWMSLPHYESTDGNKIDINIQKLSRGFTSGVSYSISDIVNGNAVLNTDTVAF TPSAKGLASFNFTVIDSEGGTMTRKVNILSGYSTLSVKENNKETADSFKVWPVPTNGNFSVLLDNEIEKADLKIYDVLGK EVQKRNINGKTTENIHLREKGVYILKVSNPNNKKVLHVKKIIVQ
Sequences:
>Translated_924_residues MSKSSMKLRYVMALACLTMTFTALFAQNPVVKIDFDQSGRPKAEVNEPDYTAWVIGSGNTSTYTENGVTFTVTRVGNNGD ALGTNWYKAGIQAPYYARLVCDGLTVKGNTANLGAQIELRISGLAPGQHTLLAFFNAVDSPTTNTFSPIDISIDGSLVVD NLIPSVRATKTADAKSTYLKFQANTDTDVVFLFAAETSGTENVKNFILNGFELNTPNIFYQATNPSPKHNDEHIELTSKN RVLGWTAAANALSHNVYFGTDPAAVEAATTSSPEYKGNQSLANTTFQVNGLYTGATYYWRIDEVLANNAVEKGNLWRFRP AQLAFPDAEGYGRFARGGRGGKVIAVTNLNDSGPGSLREAVTNDIGPRTIVFNTSGIIQLTSRLVLSQPYVTVAGQTAPG KGICIKSAPFGVTGNDAVVQNIRVRVGGGPTFDGMGLTGADHSIIDHCSISWTIDEAFSSRSGKNITLQRTLISEALNAA GHQNYPAGTEHGYAATIGGDIGSFHHNLLAHCYGRNWSLGGGLDGSGAYTGKMDITNNVVYNWGSRTTDGGTKEVNFVNN YYKPGAGSKIFVAFNQQNEGVGTGMQQCYFNGNVMPGYFDESSQTAGRKASGITVSYENFVNTPFFPSYVTTQSAKNAYK IVLSDVGCVQPEFDEHDQRIISETLNGTYSIRGSVTNKPGFPDNEADVGGYEDYPVVNRNEDWDTDQDGLPNWWENIIGT NVNSATGDFSDSNADADQDGYTNLDNYLQWMSLPHYESTDGNKIDINIQKLSRGFTSGVSYSISDIVNGNAVLNTDTVAF TPSAKGLASFNFTVIDSEGGTMTRKVNILSGYSTLSVKENNKETADSFKVWPVPTNGNFSVLLDNEIEKADLKIYDVLGK EVQKRNINGKTTENIHLREKGVYILKVSNPNNKKVLHVKKIIVQ >Mature_923_residues SKSSMKLRYVMALACLTMTFTALFAQNPVVKIDFDQSGRPKAEVNEPDYTAWVIGSGNTSTYTENGVTFTVTRVGNNGDA LGTNWYKAGIQAPYYARLVCDGLTVKGNTANLGAQIELRISGLAPGQHTLLAFFNAVDSPTTNTFSPIDISIDGSLVVDN LIPSVRATKTADAKSTYLKFQANTDTDVVFLFAAETSGTENVKNFILNGFELNTPNIFYQATNPSPKHNDEHIELTSKNR VLGWTAAANALSHNVYFGTDPAAVEAATTSSPEYKGNQSLANTTFQVNGLYTGATYYWRIDEVLANNAVEKGNLWRFRPA QLAFPDAEGYGRFARGGRGGKVIAVTNLNDSGPGSLREAVTNDIGPRTIVFNTSGIIQLTSRLVLSQPYVTVAGQTAPGK GICIKSAPFGVTGNDAVVQNIRVRVGGGPTFDGMGLTGADHSIIDHCSISWTIDEAFSSRSGKNITLQRTLISEALNAAG HQNYPAGTEHGYAATIGGDIGSFHHNLLAHCYGRNWSLGGGLDGSGAYTGKMDITNNVVYNWGSRTTDGGTKEVNFVNNY YKPGAGSKIFVAFNQQNEGVGTGMQQCYFNGNVMPGYFDESSQTAGRKASGITVSYENFVNTPFFPSYVTTQSAKNAYKI VLSDVGCVQPEFDEHDQRIISETLNGTYSIRGSVTNKPGFPDNEADVGGYEDYPVVNRNEDWDTDQDGLPNWWENIIGTN VNSATGDFSDSNADADQDGYTNLDNYLQWMSLPHYESTDGNKIDINIQKLSRGFTSGVSYSISDIVNGNAVLNTDTVAFT PSAKGLASFNFTVIDSEGGTMTRKVNILSGYSTLSVKENNKETADSFKVWPVPTNGNFSVLLDNEIEKADLKIYDVLGKE VQKRNINGKTTENIHLREKGVYILKVSNPNNKKVLHVKKIIVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 4.2.2.2
Molecular weight: Translated: 100062; Mature: 99931
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSSMKLRYVMALACLTMTFTALFAQNPVVKIDFDQSGRPKAEVNEPDYTAWVIGSGNT CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCC STYTENGVTFTVTRVGNNGDALGTNWYKAGIQAPYYARLVCDGLTVKGNTANLGAQIELR CCEECCCEEEEEEEECCCCCCCCCCCEECCCCCCEEEEEEECCEEEECCCCCCCEEEEEE ISGLAPGQHTLLAFFNAVDSPTTNTFSPIDISIDGSLVVDNLIPSVRATKTADAKSTYLK EECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEHHCCCCCCCCCCCCCEEEEE FQANTDTDVVFLFAAETSGTENVKNFILNGFELNTPNIFYQATNPSPKHNDEHIELTSKN EECCCCCCEEEEEEECCCCHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEECCC RVLGWTAAANALSHNVYFGTDPAAVEAATTSSPEYKGNQSLANTTFQVNGLYTGATYYWR EEEEEEHHHHHHCCCEEECCCCHHEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEE IDEVLANNAVEKGNLWRFRPAQLAFPDAEGYGRFARGGRGGKVIAVTNLNDSGPGSLREA EHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCHHCCCCCCEEEEEEECCCCCCCHHHHH VTNDIGPRTIVFNTSGIIQLTSRLVLSQPYVTVAGQTAPGKGICIKSAPFGVTGNDAVVQ HHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCCCHHEEE NIRVRVGGGPTFDGMGLTGADHSIIDHCSISWTIDEAFSSRSGKNITLQRTLISEALNAA EEEEEECCCCCCCCCCCCCCCCHHHHCCEEEEEEHHHHHCCCCCEEEEEHHHHHHHHHHC GHQNYPAGTEHGYAATIGGDIGSFHHNLLAHCYGRNWSLGGGLDGSGAYTGKMDITNNVV CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEE YNWGSRTTDGGTKEVNFVNNYYKPGAGSKIFVAFNQQNEGVGTGMQQCYFNGNVMPGYFD EECCCCCCCCCCEEEEEHHCCCCCCCCCEEEEEECCCCCCCCCCCHHEEECCCCCCCCCC ESSQTAGRKASGITVSYENFVNTPFFPSYVTTQSAKNAYKIVLSDVGCVQPEFDEHDQRI CCCCCCCCCCCCEEEEHHHHCCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHH ISETLNGTYSIRGSVTNKPGFPDNEADVGGYEDYPVVNRNEDWDTDQDGLPNWWENIIGT HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC NVNSATGDFSDSNADADQDGYTNLDNYLQWMSLPHYESTDGNKIDINIQKLSRGFTSGVS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCHHCCCC YSISDIVNGNAVLNTDTVAFTPSAKGLASFNFTVIDSEGGTMTRKVNILSGYSTLSVKEN EEHHHHCCCCEEEECCEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEECCEEEEEECC NKETADSFKVWPVPTNGNFSVLLDNEIEKADLKIYDVLGKEVQKRNINGKTTENIHLREK CCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEHHHHHHHHCCCCCCCCCEEEEEEC GVYILKVSNPNNKKVLHVKKIIVQ CEEEEEECCCCCCEEEEEEEECCC >Mature Secondary Structure SKSSMKLRYVMALACLTMTFTALFAQNPVVKIDFDQSGRPKAEVNEPDYTAWVIGSGNT CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCC STYTENGVTFTVTRVGNNGDALGTNWYKAGIQAPYYARLVCDGLTVKGNTANLGAQIELR CCEECCCEEEEEEEECCCCCCCCCCCEECCCCCCEEEEEEECCEEEECCCCCCCEEEEEE ISGLAPGQHTLLAFFNAVDSPTTNTFSPIDISIDGSLVVDNLIPSVRATKTADAKSTYLK EECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEHHCCCCCCCCCCCCCEEEEE FQANTDTDVVFLFAAETSGTENVKNFILNGFELNTPNIFYQATNPSPKHNDEHIELTSKN EECCCCCCEEEEEEECCCCHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEECCC RVLGWTAAANALSHNVYFGTDPAAVEAATTSSPEYKGNQSLANTTFQVNGLYTGATYYWR EEEEEEHHHHHHCCCEEECCCCHHEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEE IDEVLANNAVEKGNLWRFRPAQLAFPDAEGYGRFARGGRGGKVIAVTNLNDSGPGSLREA EHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCHHCCCCCCEEEEEEECCCCCCCHHHHH VTNDIGPRTIVFNTSGIIQLTSRLVLSQPYVTVAGQTAPGKGICIKSAPFGVTGNDAVVQ HHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCCCHHEEE NIRVRVGGGPTFDGMGLTGADHSIIDHCSISWTIDEAFSSRSGKNITLQRTLISEALNAA EEEEEECCCCCCCCCCCCCCCCHHHHCCEEEEEEHHHHHCCCCCEEEEEHHHHHHHHHHC GHQNYPAGTEHGYAATIGGDIGSFHHNLLAHCYGRNWSLGGGLDGSGAYTGKMDITNNVV CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEE YNWGSRTTDGGTKEVNFVNNYYKPGAGSKIFVAFNQQNEGVGTGMQQCYFNGNVMPGYFD EECCCCCCCCCCEEEEEHHCCCCCCCCCEEEEEECCCCCCCCCCCHHEEECCCCCCCCCC ESSQTAGRKASGITVSYENFVNTPFFPSYVTTQSAKNAYKIVLSDVGCVQPEFDEHDQRI CCCCCCCCCCCCEEEEHHHHCCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHH ISETLNGTYSIRGSVTNKPGFPDNEADVGGYEDYPVVNRNEDWDTDQDGLPNWWENIIGT HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC NVNSATGDFSDSNADADQDGYTNLDNYLQWMSLPHYESTDGNKIDINIQKLSRGFTSGVS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCHHCCCC YSISDIVNGNAVLNTDTVAFTPSAKGLASFNFTVIDSEGGTMTRKVNILSGYSTLSVKEN EEHHHHCCCCEEEECCEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEECCEEEEEECC NKETADSFKVWPVPTNGNFSVLLDNEIEKADLKIYDVLGKEVQKRNINGKTTENIHLREK CCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEHHHHHHHHCCCCCCCCCEEEEEEC GVYILKVSNPNNKKVLHVKKIIVQ CEEEEEECCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA