| Definition | Enterobacter sp. 638 plasmid pENTE01, complete sequence. |
|---|---|
| Accession | NC_009425 |
| Length | 157,749 |
Click here to switch to the map view.
The map label for this gene is traD [H]
Identifier: 146284634
GI number: 146284634
Start: 132674
End: 135196
Strand: Direct
Name: traD [H]
Synonym: Ent638_4308
Alternate gene names: 146284634
Gene position: 132674-135196 (Clockwise)
Preceding gene: 146284633
Following gene: 146284635
Centisome position: 84.1
GC content: 57.91
Gene sequence:
>2523_bases ATGACCGCCTACCGCTGGCGCATGTTCCTTCAGGTGAATAACTGGATTGGTTTCTGGATTTTCATTTTGTTCGCCGTGCT GGCGTCCGCCATTTTCTTCTGGCGCATTCCCCAGGAAACCCTCGATAACGGCTCCCTGTGGTGGTTCGCGTGGATGAACA GCAGTTTTATCGATCTGATGCCAGCCAGCGCCCCGAAACTCTACGACATTCACTACTGGTACGCGCCGACGCAGACGCCG ATGGTGCTGAAAATGACCCTCGCGCAAATCTTTACCGACCCCTACATGACGGCAATGGGCGATCAGGTGCTCAGTGAGCT GCAGTGGGCTGGCCTGGCAAGCGGCGTGTTCAGTATGGCGGTTTTTCTGGCCGTCACCTGGTACATCGTGGGGATAGGGC GTCGTGAGAGCGAGGATGAATATCTCTCAGGTATGACGCTGACCGACAAAGCCGCCGACGTTAACCAGCTGCTGCGCCGG AACGGGGAGTTGTCTGACCTGCGCGTGGGTGACCTGCACATGGTCAGAATGGCGGAGGTCATGAACTTCCTGATGCACGG GACCATCGGGGTGGGTAAGTCGACCCTCATCCGCTGGCTGCTGGATTACATCCGTAAACGCGGTGACCGGGCCATTATTT ACGACTCCGGCTGTACCTTCACCGAAACCCACTACAACCCCGATACCGACTTCATTCTTAACGCGCACGACGATCGCTGC GCGAACTGGCAGCTGTGGGGCGAGTGCGTCGATGCCGTTGATTACGACAATATGGCGTCGAGCCTGATCCCCGTGGAAGG TGAATCGGACCCGTTCTGGGTCTCCAGCTCGCGCACCATCTTTGCGGACCTGGCGATTCGGATGTCGGTTGACCCGGACC GCAGTATTGAGAAATTCCTCAAAACCCTGCTGTCACTCAGCATGAAAAGCCTGCGTGAGTATCTGGCTAACACGCCGTCG GCCAACCTGGTTGAGGAGAAAATCGAAAAGACCGCCATCTCCATCCGTTCTGTCGTCACCAACTATGCGAAGTCGCTGCG CTACCTGCAGGGGCTGGATGATGGCGTCAAACCACCGTTCACCATCCGCGAATGGATGACAAAAGAGGAGCATGACAGCA GCTGGCTGTTTATCTCCACTCAGGCCCGGCACCGTAAAAGCGTGCGACCGCTCATTTCCCTGTGGGTGTCACTGGCCACC ATGATGCTGCAGAGCATGGGGGAGAACAGCGATCGTCGCGTCTGGTTCATCTACGATGAAATCCCGAGCCTGCAGCGTAT TCCTGAGCTGGCAGAAACTCTCGCGGAAGCCCGTAAGTTTGGCGGGTGCTTTGTACTGGGCATGCAGAACATGGCGCAGC TGGTCCACGTCTACGGCCGGGAACTGGCCAAAAGTATTTTCGACCTGATGAACACCCGTATGTACGGTCGCTCCCCGAGC GCCGAGATGGCCAAAGTGGTGGAGGAGGAGCTGGGTAACCAGCGTAAACGCAAAATCCGGGAGCAGAACAGCTACGGTCT GGACCAGGTGCGTGACGGTGTGTCGCTCGGCAAGGATGAGGTCAATAACCCGATAGTGGATTACGAGCAGGTGATGCGCC TGCCCAACCTGAATTTTTACGTGCGCCTGCCGGGTGAGTATCCGGTAGTGCGCCTGAAGCTGAAATACCGTGAGCAGAAG AAGCACCACCCTGGCCTGATAGAGCGCAATATCCACGACGCCCTGAGTCCGGAGCTGGAAAAGGTGATTCAGGCCAATGA ACGGGCGGCCTCCGTCGCGGGCCTTGCCTTCCCGACCGGTGATGAGGTGCTGGAGAAAGGCAGTAACAGTGAAACCGCCA CCACGATAAACACGCCGGCAACGGTCCGGCAAACGCCTGTGGTGGCAAAACCCGTGACTGCCTCGGCGATATCGCAGAAA CCTGCGCCGGCCGTGACCGCCGTGAATAAGCCCGATGAGCCGGTTTTACCGGTTAAACACAGTCCGGTGACACCCCCTGC CACTGAACCTGAAAAAAACAACCTGGTATCGCTTCACAGTATCCGTCAGACCGCGCCTTCCCCGGACAGTGGTCTTCCTG TCGCAGAAACACCTTCTGAGCACGCTGTGTCTTCTGCACCCTCTGAAGCGGCAGCCTCAGTTGTCCCTTCGGTTGCATTA CCTGCAGCCCTGCAAAGTCTGCGTAACCGCCCCGTTTCGCCTGAGCCAGCGCCGACGTCCGCCCTTGGCATGCTGCAAAA AGCCCGTCAGCGCCCGGTCAACACGGAAAGCGATCAGCAGGGTGAGGATAATGCCGGCGGGGAATCCATGAATCTCGAGA TGCATGTCTCTGAACGGGCAGACGGTGGCCTGAGCATCACGACGGCAGGTCACCCTCCCGAGCCTGAACACGCGGCTGAA ACCCATCGTGTCAGCCGGCAACTGGCCCAGGAAGAAGAGAACATTTTACGTCACCGTGAGCCGGACGATCCGGGTTACAG CGATTACGACCAACACTACGATGACAGAGAGCCAGACCTATGA
Upstream 100 bases:
>100_bases TCCCCACTTTCTGATAACCCACATCACCTGCCGGTGATGCGATAACTGCCGGACATTTTCTATGAGCTTTGCAGGAAAAA ATCTTACCCAGGGCGGGCAG
Downstream 100 bases:
>100_bases TGTCAGTCGCCCCCGTAGCCTCAGCCGGCGGAGCCGCCGGCTACTACAGCAATGCCGATAACTACTATTTCCTCGGGAAT CTCCAGAGCCTGTGGCTGGG
Product: Type IV secretory pathway VirD4 components-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MTAYRWRMFLQVNNWIGFWIFILFAVLASAIFFWRIPQETLDNGSLWWFAWMNSSFIDLMPASAPKLYDIHYWYAPTQTP MVLKMTLAQIFTDPYMTAMGDQVLSELQWAGLASGVFSMAVFLAVTWYIVGIGRRESEDEYLSGMTLTDKAADVNQLLRR NGELSDLRVGDLHMVRMAEVMNFLMHGTIGVGKSTLIRWLLDYIRKRGDRAIIYDSGCTFTETHYNPDTDFILNAHDDRC ANWQLWGECVDAVDYDNMASSLIPVEGESDPFWVSSSRTIFADLAIRMSVDPDRSIEKFLKTLLSLSMKSLREYLANTPS ANLVEEKIEKTAISIRSVVTNYAKSLRYLQGLDDGVKPPFTIREWMTKEEHDSSWLFISTQARHRKSVRPLISLWVSLAT MMLQSMGENSDRRVWFIYDEIPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPS AEMAKVVEEELGNQRKRKIREQNSYGLDQVRDGVSLGKDEVNNPIVDYEQVMRLPNLNFYVRLPGEYPVVRLKLKYREQK KHHPGLIERNIHDALSPELEKVIQANERAASVAGLAFPTGDEVLEKGSNSETATTINTPATVRQTPVVAKPVTASAISQK PAPAVTAVNKPDEPVLPVKHSPVTPPATEPEKNNLVSLHSIRQTAPSPDSGLPVAETPSEHAVSSAPSEAAASVVPSVAL PAALQSLRNRPVSPEPAPTSALGMLQKARQRPVNTESDQQGEDNAGGESMNLEMHVSERADGGLSITTAGHPPEPEHAAE THRVSRQLAQEEENILRHREPDDPGYSDYDQHYDDREPDL
Sequences:
>Translated_840_residues MTAYRWRMFLQVNNWIGFWIFILFAVLASAIFFWRIPQETLDNGSLWWFAWMNSSFIDLMPASAPKLYDIHYWYAPTQTP MVLKMTLAQIFTDPYMTAMGDQVLSELQWAGLASGVFSMAVFLAVTWYIVGIGRRESEDEYLSGMTLTDKAADVNQLLRR NGELSDLRVGDLHMVRMAEVMNFLMHGTIGVGKSTLIRWLLDYIRKRGDRAIIYDSGCTFTETHYNPDTDFILNAHDDRC ANWQLWGECVDAVDYDNMASSLIPVEGESDPFWVSSSRTIFADLAIRMSVDPDRSIEKFLKTLLSLSMKSLREYLANTPS ANLVEEKIEKTAISIRSVVTNYAKSLRYLQGLDDGVKPPFTIREWMTKEEHDSSWLFISTQARHRKSVRPLISLWVSLAT MMLQSMGENSDRRVWFIYDEIPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPS AEMAKVVEEELGNQRKRKIREQNSYGLDQVRDGVSLGKDEVNNPIVDYEQVMRLPNLNFYVRLPGEYPVVRLKLKYREQK KHHPGLIERNIHDALSPELEKVIQANERAASVAGLAFPTGDEVLEKGSNSETATTINTPATVRQTPVVAKPVTASAISQK PAPAVTAVNKPDEPVLPVKHSPVTPPATEPEKNNLVSLHSIRQTAPSPDSGLPVAETPSEHAVSSAPSEAAASVVPSVAL PAALQSLRNRPVSPEPAPTSALGMLQKARQRPVNTESDQQGEDNAGGESMNLEMHVSERADGGLSITTAGHPPEPEHAAE THRVSRQLAQEEENILRHREPDDPGYSDYDQHYDDREPDL >Mature_839_residues TAYRWRMFLQVNNWIGFWIFILFAVLASAIFFWRIPQETLDNGSLWWFAWMNSSFIDLMPASAPKLYDIHYWYAPTQTPM VLKMTLAQIFTDPYMTAMGDQVLSELQWAGLASGVFSMAVFLAVTWYIVGIGRRESEDEYLSGMTLTDKAADVNQLLRRN GELSDLRVGDLHMVRMAEVMNFLMHGTIGVGKSTLIRWLLDYIRKRGDRAIIYDSGCTFTETHYNPDTDFILNAHDDRCA NWQLWGECVDAVDYDNMASSLIPVEGESDPFWVSSSRTIFADLAIRMSVDPDRSIEKFLKTLLSLSMKSLREYLANTPSA NLVEEKIEKTAISIRSVVTNYAKSLRYLQGLDDGVKPPFTIREWMTKEEHDSSWLFISTQARHRKSVRPLISLWVSLATM MLQSMGENSDRRVWFIYDEIPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPSA EMAKVVEEELGNQRKRKIREQNSYGLDQVRDGVSLGKDEVNNPIVDYEQVMRLPNLNFYVRLPGEYPVVRLKLKYREQKK HHPGLIERNIHDALSPELEKVIQANERAASVAGLAFPTGDEVLEKGSNSETATTINTPATVRQTPVVAKPVTASAISQKP APAVTAVNKPDEPVLPVKHSPVTPPATEPEKNNLVSLHSIRQTAPSPDSGLPVAETPSEHAVSSAPSEAAASVVPSVALP AALQSLRNRPVSPEPAPTSALGMLQKARQRPVNTESDQQGEDNAGGESMNLEMHVSERADGGLSITTAGHPPEPEHAAET HRVSRQLAQEEENILRHREPDDPGYSDYDQHYDDREPDL
Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energize DNA transport [H]
COG id: COG3505
COG function: function code U; Type IV secretory pathway, VirD4 components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To traD of plasmid IncFII R100 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014128 - InterPro: IPR019476 - InterPro: IPR022585 [H]
Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]
EC number: NA
Molecular weight: Translated: 94369; Mature: 94238
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAYRWRMFLQVNNWIGFWIFILFAVLASAIFFWRIPQETLDNGSLWWFAWMNSSFIDLM CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCHHHHC PASAPKLYDIHYWYAPTQTPMVLKMTLAQIFTDPYMTAMGDQVLSELQWAGLASGVFSMA CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLAVTWYIVGIGRRESEDEYLSGMTLTDKAADVNQLLRRNGELSDLRVGDLHMVRMAEV HHHHHHHHHHCCCCCCCCHHHHCCCEECCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHH MNFLMHGTIGVGKSTLIRWLLDYIRKRGDRAIIYDSGCTFTETHYNPDTDFILNAHDDRC HHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCCCEEEECCCCCC ANWQLWGECVDAVDYDNMASSLIPVEGESDPFWVSSSRTIFADLAIRMSVDPDRSIEKFL CCHHHHHHHHHHHCHHHHHHCEECCCCCCCCEEECCCCEEEEEEEEEEECCCCHHHHHHH KTLLSLSMKSLREYLANTPSANLVEEKIEKTAISIRSVVTNYAKSLRYLQGLDDGVKPPF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH TIREWMTKEEHDSSWLFISTQARHRKSVRPLISLWVSLATMMLQSMGENSDRRVWFIYDE HHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC IPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPS CCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AEMAKVVEEELGNQRKRKIREQNSYGLDQVRDGVSLGKDEVNNPIVDYEQVMRLPNLNFY HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCEE VRLPGEYPVVRLKLKYREQKKHHPGLIERNIHDALSPELEKVIQANERAASVAGLAFPTG EECCCCCCEEEEEEEHHHHHCCCCCCHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC DEVLEKGSNSETATTINTPATVRQTPVVAKPVTASAISQKPAPAVTAVNKPDEPVLPVKH HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCC SPVTPPATEPEKNNLVSLHSIRQTAPSPDSGLPVAETPSEHAVSSAPSEAAASVVPSVAL CCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHH PAALQSLRNRPVSPEPAPTSALGMLQKARQRPVNTESDQQGEDNAGGESMNLEMHVSERA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCC DGGLSITTAGHPPEPEHAAETHRVSRQLAQEEENILRHREPDDPGYSDYDQHYDDREPDL CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCC >Mature Secondary Structure TAYRWRMFLQVNNWIGFWIFILFAVLASAIFFWRIPQETLDNGSLWWFAWMNSSFIDLM CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCHHHHC PASAPKLYDIHYWYAPTQTPMVLKMTLAQIFTDPYMTAMGDQVLSELQWAGLASGVFSMA CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLAVTWYIVGIGRRESEDEYLSGMTLTDKAADVNQLLRRNGELSDLRVGDLHMVRMAEV HHHHHHHHHHCCCCCCCCHHHHCCCEECCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHH MNFLMHGTIGVGKSTLIRWLLDYIRKRGDRAIIYDSGCTFTETHYNPDTDFILNAHDDRC HHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCCCEEEECCCCCC ANWQLWGECVDAVDYDNMASSLIPVEGESDPFWVSSSRTIFADLAIRMSVDPDRSIEKFL CCHHHHHHHHHHHCHHHHHHCEECCCCCCCCEEECCCCEEEEEEEEEEECCCCHHHHHHH KTLLSLSMKSLREYLANTPSANLVEEKIEKTAISIRSVVTNYAKSLRYLQGLDDGVKPPF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH TIREWMTKEEHDSSWLFISTQARHRKSVRPLISLWVSLATMMLQSMGENSDRRVWFIYDE HHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC IPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPS CCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AEMAKVVEEELGNQRKRKIREQNSYGLDQVRDGVSLGKDEVNNPIVDYEQVMRLPNLNFY HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCEE VRLPGEYPVVRLKLKYREQKKHHPGLIERNIHDALSPELEKVIQANERAASVAGLAFPTG EECCCCCCEEEEEEEHHHHHCCCCCCHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC DEVLEKGSNSETATTINTPATVRQTPVVAKPVTASAISQKPAPAVTAVNKPDEPVLPVKH HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCC SPVTPPATEPEKNNLVSLHSIRQTAPSPDSGLPVAETPSEHAVSSAPSEAAASVVPSVAL CCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHH PAALQSLRNRPVSPEPAPTSALGMLQKARQRPVNTESDQQGEDNAGGESMNLEMHVSERA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCC DGGLSITTAGHPPEPEHAAETHRVSRQLAQEEENILRHREPDDPGYSDYDQHYDDREPDL CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2680768; 7915817; 10464182; 3323526; 2164585; 2163400; 1618779; 10498725 [H]