Click here to switch to the map view.

The map label for this gene is traB [H]

Identifier: 146284613

GI number: 146284613

Start: 110850

End: 112250

Strand: Direct

Name: traB [H]

Synonym: Ent638_4287

Alternate gene names: 146284613

Gene position: 110850-112250 (Clockwise)

Preceding gene: 146284612

Following gene: 146284614

Centisome position: 70.27

GC content: 60.1

Gene sequence:

>1401_bases
ATGAGTCTGAACGAAAATCTTAAAACCCGCCGCACCCAGTTGGCTGTTCTGGCCACCGTGATTGCCGTCGGTGCCGCCAC
CGCCGGCGGCGTGATGTGGTACGGGAATCATCAGGAACAGCAAAAGCACCCTGCGCCTGTTGCCGCACCCAATATGACCG
GCGTGGTCACCGCCTCCTTTAATGAGCAGGTGAACGACGCGGCACTGGCACAGCAGCAGGCCAAAACCTCTGCGCTTGAG
CAGCAGTACGCCACGCTTGCTCAGCTGGTCGCCCAGAACAAGCTCACCACAGAACAGAAACTGGCCGAGAAGGACGCTGA
AATTCAGCGCCTGACCGACCAGGTCCAGAAAGCCCCCGGCAGCAACACGACCACGGGCCAGCAGTCACCACCTGCTGGCC
AGAACGGAACACCACTCCCGGGTCCCGTTGCTGCCGGTCAGGCCCGACCGCCGGAATACTCCGTCACCCCCAACGCACCG
GCCGCCACTGGTGTCAACATGGGGCAGGGCGCAGGGTTCTATCCGGGCGGCTCAGGCCAGCGATTAACCGGTGGACTCTC
CACCACGAAGTTCAGTTATGACAGCCTAAAAAAGAAGCCCACTAAGCTGCCGTGGATACCGTCCGGCTCTTTCTCTGACG
CCGTCATGATTGAAGGGGCTGATGCCAATGCCAGCGTCACCGGTCAGCAAAACACCAGTCCCGTAACGCTTCGCCTGCAG
GGCAATATTCAGATGCCCAACAACAAGGAATACAGCGCCGACGGATGTTTCATCGTAGGGGAAATCTGGGGTGACATTTC
CAGTGAGCGCGGCACCGTGCGCACCCAGTCCATCAGCTGCGTGCTGAAGAACGGCAAACACGTCGATATGGAGTTTCAGG
GGCACGTCAGCTACCAGGGCAAAAACGGGATTCGCGGCAAGCCTGTCATGCGTAACGGCATGATTGTCGGCTACGCCGGC
GCGGCCGGTATGCTGTCTGGTTTTGGTGAGGGCATCAAGTCCGCCGCCACACCGTCCGTGGGTCTCGGTGCAACAGCCGA
TGTTGGCGCAGGTGACGTATTCAAACAGGGCTTCGGGGGCGGTGCCAATAAAGCGGCTGACACGCTGAGCCAGTACTGGA
TCAAGCGCGCCGAGCAGTATCACCCGGTGATTGATATCGGGGCCGGCAACCAGGTCACGGTGGTATTCCAGAAGGGCTTC
CGCCTTGAAACACTGGAAGATGCTGAGGACGCGAAGGCGAAAGAGGAGTTGCAGAAAGCCGGCAATGCCGCGCAGAACGC
TGTCTCGCCACAACCTGCCAGTCAGTCGACCACCTCCGGCACGGCGTCAGTCGGCAATATCAATCCCGATGATGTGCTTC
GTCAGGCCAGCCAGCTGCGCCTCGGTGACACTATCAACTGA

Upstream 100 bases:

>100_bases
TGAAGGGGGTTCGCGCCGTCATGCTCTCCCAAAACCAGCTGTATGCCGGGGGCGAAGGGTATGCCTGGGTCGTGTTTTCG
GATGACGGAGTACCGCGCTC

Downstream 100 bases:

>100_bases
TGATGAGGTAAATATGAACGCACGAAAAATACTGCATTGGGCAGCCACTGGCTGGACCCCGATGCTGATATTCATCGCTT
CAATAGTTGTTTTATACGCC

Product: conjugal transfer pilus assembly protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSLNENLKTRRTQLAVLATVIAVGAATAGGVMWYGNHQEQQKHPAPVAAPNMTGVVTASFNEQVNDAALAQQQAKTSALE
QQYATLAQLVAQNKLTTEQKLAEKDAEIQRLTDQVQKAPGSNTTTGQQSPPAGQNGTPLPGPVAAGQARPPEYSVTPNAP
AATGVNMGQGAGFYPGGSGQRLTGGLSTTKFSYDSLKKKPTKLPWIPSGSFSDAVMIEGADANASVTGQQNTSPVTLRLQ
GNIQMPNNKEYSADGCFIVGEIWGDISSERGTVRTQSISCVLKNGKHVDMEFQGHVSYQGKNGIRGKPVMRNGMIVGYAG
AAGMLSGFGEGIKSAATPSVGLGATADVGAGDVFKQGFGGGANKAADTLSQYWIKRAEQYHPVIDIGAGNQVTVVFQKGF
RLETLEDAEDAKAKEELQKAGNAAQNAVSPQPASQSTTSGTASVGNINPDDVLRQASQLRLGDTIN

Sequences:

>Translated_466_residues
MSLNENLKTRRTQLAVLATVIAVGAATAGGVMWYGNHQEQQKHPAPVAAPNMTGVVTASFNEQVNDAALAQQQAKTSALE
QQYATLAQLVAQNKLTTEQKLAEKDAEIQRLTDQVQKAPGSNTTTGQQSPPAGQNGTPLPGPVAAGQARPPEYSVTPNAP
AATGVNMGQGAGFYPGGSGQRLTGGLSTTKFSYDSLKKKPTKLPWIPSGSFSDAVMIEGADANASVTGQQNTSPVTLRLQ
GNIQMPNNKEYSADGCFIVGEIWGDISSERGTVRTQSISCVLKNGKHVDMEFQGHVSYQGKNGIRGKPVMRNGMIVGYAG
AAGMLSGFGEGIKSAATPSVGLGATADVGAGDVFKQGFGGGANKAADTLSQYWIKRAEQYHPVIDIGAGNQVTVVFQKGF
RLETLEDAEDAKAKEELQKAGNAAQNAVSPQPASQSTTSGTASVGNINPDDVLRQASQLRLGDTIN
>Mature_465_residues
SLNENLKTRRTQLAVLATVIAVGAATAGGVMWYGNHQEQQKHPAPVAAPNMTGVVTASFNEQVNDAALAQQQAKTSALEQ
QYATLAQLVAQNKLTTEQKLAEKDAEIQRLTDQVQKAPGSNTTTGQQSPPAGQNGTPLPGPVAAGQARPPEYSVTPNAPA
ATGVNMGQGAGFYPGGSGQRLTGGLSTTKFSYDSLKKKPTKLPWIPSGSFSDAVMIEGADANASVTGQQNTSPVTLRLQG
NIQMPNNKEYSADGCFIVGEIWGDISSERGTVRTQSISCVLKNGKHVDMEFQGHVSYQGKNGIRGKPVMRNGMIVGYAGA
AGMLSGFGEGIKSAATPSVGLGATADVGAGDVFKQGFGGGANKAADTLSQYWIKRAEQYHPVIDIGAGNQVTVVFQKGFR
LETLEDAEDAKAKEELQKAGNAAQNAVSPQPASQSTTSGTASVGNINPDDVLRQASQLRLGDTIN

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 48574; Mature: 48442

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNENLKTRRTQLAVLATVIAVGAATAGGVMWYGNHQEQQKHPAPVAAPNMTGVVTASF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCCCEEEEECC
NEQVNDAALAQQQAKTSALEQQYATLAQLVAQNKLTTEQKLAEKDAEIQRLTDQVQKAPG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
SNTTTGQQSPPAGQNGTPLPGPVAAGQARPPEYSVTPNAPAATGVNMGQGAGFYPGGSGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RLTGGLSTTKFSYDSLKKKPTKLPWIPSGSFSDAVMIEGADANASVTGQQNTSPVTLRLQ
EEECCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCEEEEEE
GNIQMPNNKEYSADGCFIVGEIWGDISSERGTVRTQSISCVLKNGKHVDMEFQGHVSYQG
CCEECCCCCCCCCCCCEEEEEHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEECEEEECC
KNGIRGKPVMRNGMIVGYAGAAGMLSGFGEGIKSAATPSVGLGATADVGAGDVFKQGFGG
CCCCCCCCEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC
GANKAADTLSQYWIKRAEQYHPVIDIGAGNQVTVVFQKGFRLETLEDAEDAKAKEELQKA
CCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCEECCCCCHHHHHHHHHHHHH
GNAAQNAVSPQPASQSTTSGTASVGNINPDDVLRQASQLRLGDTIN
CCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLNENLKTRRTQLAVLATVIAVGAATAGGVMWYGNHQEQQKHPAPVAAPNMTGVVTASF
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCCCEEEEECC
NEQVNDAALAQQQAKTSALEQQYATLAQLVAQNKLTTEQKLAEKDAEIQRLTDQVQKAPG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
SNTTTGQQSPPAGQNGTPLPGPVAAGQARPPEYSVTPNAPAATGVNMGQGAGFYPGGSGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RLTGGLSTTKFSYDSLKKKPTKLPWIPSGSFSDAVMIEGADANASVTGQQNTSPVTLRLQ
EEECCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCEEEEEE
GNIQMPNNKEYSADGCFIVGEIWGDISSERGTVRTQSISCVLKNGKHVDMEFQGHVSYQG
CCEECCCCCCCCCCCCEEEEEHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEECEEEECC
KNGIRGKPVMRNGMIVGYAGAAGMLSGFGEGIKSAATPSVGLGATADVGAGDVFKQGFGG
CCCCCCCCEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC
GANKAADTLSQYWIKRAEQYHPVIDIGAGNQVTVVFQKGFRLETLEDAEDAKAKEELQKA
CCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCEECCCCCHHHHHHHHHHHHH
GNAAQNAVSPQPASQSTTSGTASVGNINPDDVLRQASQLRLGDTIN
CCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]