Click here to switch to the map view.

The map label for this gene is traB [H]

Identifier: 145301412

GI number: 145301412

Start: 24503

End: 25831

Strand: Direct

Name: traB [H]

Synonym: ASA_P5G028

Alternate gene names: 145301412

Gene position: 24503-25831 (Clockwise)

Preceding gene: 145301411

Following gene: 145301413

Centisome position: 15.8

GC content: 58.84

Gene sequence:

>1329_bases
ATGGCCAACATTAATGCGATAACCAAGCGCAAACAGATCATGCTCGCCTCATCCGTCGCGCTGATCGTCGTCGCTGGCGG
TGCGGGTGGGTGGTATCTGTCCACCATGGATCAGCGCAACGCCGCCAAGGCGGCCCAAAGCGAACCAGCCCCAGACATGA
CCGGGGTCGTCAATGCCCAATTTGATGACAAGGTACAGCAGTCGGCTGTCACCGAGTTTCAGCTCATCAACAAGGAAGTG
CGCCAGCAGCTGGCCGCCATGCGCACAGAAATGGCCATGATGTCCCGTGAGCGCAAAAATGATCAGGAGCGTCTGGCCTC
ACTGGAAGCCGAAAACAAGGAGCTCAAAGCCGCCACCGCCTCCGGTCCCTCGCTACAGGCCCCCACTGGCGAACCCGCCC
CCAGCTCGGCAAATCCGGCGCAAATGGCCAACGGCAACATCCCGCCGCCAACCGCCTTTTATCCCGGCATGGGTAACGTC
CAGCCAGGGCAAATGACCATTCAACCAATGGCCCCGGTGCAGCCGGTCAATGCCATCGATTCCACCACGTTCAGTTATGA
CGACGACCAGCCCAGCCAGGCCCCCAGGTACCCCTACATTCCGTCCGGATCATTTGCCAAGGCGGTTGTCATTGAGGGGG
CAGATACCAACGCCGCAGTCACCGGCCAGCAGAACACCTCCCCGATGCAACTACGCCTGACTGGCAAAGTGCAAATGCCA
AACGATCACGAATACGACCTGACCGGCTGTTTTGTCACCCTGGAAGCGTGGGGGGATGTCTCCAGTGAGCGGGCCATCGT
CCGCACACGCGGGATCAGCTGTAAAAAGAGCAACGACGTGATCGACCAGAAGATCGCCGGTCACGTCTCGTTCATGGGAA
AAAACGGCATCAAGGGCGAGGTCATTATGCGTAACGGCCAGATCCTGGGCTGGGCCTGGGGGGCAGGCTTCATTGATGGC
GTGGGTAAGGGCATCGAAAAATCAGCCAGTCCGCAAGTGGGTATCGGGGCTACCGCGACCATGAATGGCGGCGACATAGC
CAAAGCAGGCATAGGCGGCGGCGCAGGACAGGCGGCCAAAACCCTCTCTGACTACTACATCAAACGCGCCGAGCAGTACC
ACCCCATCATCCCGATTGGTGCGGGCAATGAAGTCACGATGGTGTTTCAGGACGGGTTCCAGCTCGAAACCATCGCCGAG
GCCGCACTCAAAAAAGCCAATAAAGCACCGGTGCCACAACAGGACGATGTGTTAGCCGATCCCACTGTCACCCGTTCATT
CAAAGACATGAAAGTGGGCGATCTCGTTGACCCCCCACTCCATCAATGA

Upstream 100 bases:

>100_bases
ATGCCTGGTACCCGCGCCATCATGGTGCACCCCAGATATCAGCGCCTGATCGCCGGGGCATCGACCTGGCTCTATGTGAT
CCGCACACAGGAGCACACCG

Downstream 100 bases:

>100_bases
GGATAACCACCATGAAACGATTTTTATGCCTGTCCGTATTCTGTGCCCTGCTGGGCGGGTGTGCGGGTAGCGCCAGCGAG
TTTGAATGCAATGCCACCAC

Product: conjugal transfer pilus assembly protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MANINAITKRKQIMLASSVALIVVAGGAGGWYLSTMDQRNAAKAAQSEPAPDMTGVVNAQFDDKVQQSAVTEFQLINKEV
RQQLAAMRTEMAMMSRERKNDQERLASLEAENKELKAATASGPSLQAPTGEPAPSSANPAQMANGNIPPPTAFYPGMGNV
QPGQMTIQPMAPVQPVNAIDSTTFSYDDDQPSQAPRYPYIPSGSFAKAVVIEGADTNAAVTGQQNTSPMQLRLTGKVQMP
NDHEYDLTGCFVTLEAWGDVSSERAIVRTRGISCKKSNDVIDQKIAGHVSFMGKNGIKGEVIMRNGQILGWAWGAGFIDG
VGKGIEKSASPQVGIGATATMNGGDIAKAGIGGGAGQAAKTLSDYYIKRAEQYHPIIPIGAGNEVTMVFQDGFQLETIAE
AALKKANKAPVPQQDDVLADPTVTRSFKDMKVGDLVDPPLHQ

Sequences:

>Translated_442_residues
MANINAITKRKQIMLASSVALIVVAGGAGGWYLSTMDQRNAAKAAQSEPAPDMTGVVNAQFDDKVQQSAVTEFQLINKEV
RQQLAAMRTEMAMMSRERKNDQERLASLEAENKELKAATASGPSLQAPTGEPAPSSANPAQMANGNIPPPTAFYPGMGNV
QPGQMTIQPMAPVQPVNAIDSTTFSYDDDQPSQAPRYPYIPSGSFAKAVVIEGADTNAAVTGQQNTSPMQLRLTGKVQMP
NDHEYDLTGCFVTLEAWGDVSSERAIVRTRGISCKKSNDVIDQKIAGHVSFMGKNGIKGEVIMRNGQILGWAWGAGFIDG
VGKGIEKSASPQVGIGATATMNGGDIAKAGIGGGAGQAAKTLSDYYIKRAEQYHPIIPIGAGNEVTMVFQDGFQLETIAE
AALKKANKAPVPQQDDVLADPTVTRSFKDMKVGDLVDPPLHQ
>Mature_441_residues
ANINAITKRKQIMLASSVALIVVAGGAGGWYLSTMDQRNAAKAAQSEPAPDMTGVVNAQFDDKVQQSAVTEFQLINKEVR
QQLAAMRTEMAMMSRERKNDQERLASLEAENKELKAATASGPSLQAPTGEPAPSSANPAQMANGNIPPPTAFYPGMGNVQ
PGQMTIQPMAPVQPVNAIDSTTFSYDDDQPSQAPRYPYIPSGSFAKAVVIEGADTNAAVTGQQNTSPMQLRLTGKVQMPN
DHEYDLTGCFVTLEAWGDVSSERAIVRTRGISCKKSNDVIDQKIAGHVSFMGKNGIKGEVIMRNGQILGWAWGAGFIDGV
GKGIEKSASPQVGIGATATMNGGDIAKAGIGGGAGQAAKTLSDYYIKRAEQYHPIIPIGAGNEVTMVFQDGFQLETIAEA
ALKKANKAPVPQQDDVLADPTVTRSFKDMKVGDLVDPPLHQ

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 46879; Mature: 46747

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANINAITKRKQIMLASSVALIVVAGGAGGWYLSTMDQRNAAKAAQSEPAPDMTGVVNAQ
CCCCCHHHHHHHEEEEECEEEEEEECCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEECC
FDDKVQQSAVTEFQLINKEVRQQLAAMRTEMAMMSRERKNDQERLASLEAENKELKAATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEC
SGPSLQAPTGEPAPSSANPAQMANGNIPPPTAFYPGMGNVQPGQMTIQPMAPVQPVNAID
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHC
STTFSYDDDQPSQAPRYPYIPSGSFAKAVVIEGADTNAAVTGQQNTSPMQLRLTGKVQMP
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCEEEEEEEEEECC
NDHEYDLTGCFVTLEAWGDVSSERAIVRTRGISCKKSNDVIDQKIAGHVSFMGKNGIKGE
CCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHEEEECCCCCCCE
VIMRNGQILGWAWGAGFIDGVGKGIEKSASPQVGIGATATMNGGDIAKAGIGGGAGQAAK
EEEECCCEEEEECCCHHHHHHCCCCHHCCCCCCCCCEEEECCCCCEEECCCCCCCCHHHH
TLSDYYIKRAEQYHPIIPIGAGNEVTMVFQDGFQLETIAEAALKKANKAPVPQQDDVLAD
HHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEECC
PTVTRSFKDMKVGDLVDPPLHQ
CHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANINAITKRKQIMLASSVALIVVAGGAGGWYLSTMDQRNAAKAAQSEPAPDMTGVVNAQ
CCCCHHHHHHHEEEEECEEEEEEECCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEECC
FDDKVQQSAVTEFQLINKEVRQQLAAMRTEMAMMSRERKNDQERLASLEAENKELKAATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEC
SGPSLQAPTGEPAPSSANPAQMANGNIPPPTAFYPGMGNVQPGQMTIQPMAPVQPVNAID
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHC
STTFSYDDDQPSQAPRYPYIPSGSFAKAVVIEGADTNAAVTGQQNTSPMQLRLTGKVQMP
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCEEEEEEEEEECC
NDHEYDLTGCFVTLEAWGDVSSERAIVRTRGISCKKSNDVIDQKIAGHVSFMGKNGIKGE
CCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHEEEECCCCCCCE
VIMRNGQILGWAWGAGFIDGVGKGIEKSASPQVGIGATATMNGGDIAKAGIGGGAGQAAK
EEEECCCEEEEECCCHHHHHHCCCCHHCCCCCCCCCEEEECCCCCEEECCCCCCCCHHHH
TLSDYYIKRAEQYHPIIPIGAGNEVTMVFQDGFQLETIAEAALKKANKAPVPQQDDVLAD
HHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEECC
PTVTRSFKDMKVGDLVDPPLHQ
CHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]