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The map label for this gene is agmR [H]

Identifier: 145300026

GI number: 145300026

Start: 3377152

End: 3377796

Strand: Direct

Name: agmR [H]

Synonym: ASA_3125

Alternate gene names: 145300026

Gene position: 3377152-3377796 (Clockwise)

Preceding gene: 145300024

Following gene: 145300027

Centisome position: 71.82

GC content: 60.31

Gene sequence:

>645_bases
ATGGACAGCCAATTTACCATCGTCATCGCAGATGACCACCCCCTGTTTCGGGGCGCCCTCTATCAAGCTGTGCACATGGC
CATCAACGATGCCCAGCTGCTGGAGGCCGACTCCATCAACAGCCTGACCAGCCTGCTGGGGGAACACCCTGAAGTAGACC
TGTTGCTGCTCGATCTCAAGATGCCCGGCGCCAACGGCTTCTCCGGCCTCGCCCACCTGCGCGGTCAGTATCCCGACCTG
CCCATTGTCGTGGTCTCCGCCTCGGAAGATGCCGCCATCATCCAGCAGGTACTGCGGCTCGGCGCGCTGGGTTTCATCCC
CAAGTCGGTCCCCATGAAGGAGCTGGTCAACGCCCTCAATACGGTGATCGGGGGAGATAACTGGGTGCCAGCCGGCATAT
CCCTGCATCCCGAATCCGAAGACGGCCCCGATTTCGCCAGCAAGCTCGCCAGCCTCACTCCACAGCAGTACAAGGTGCTG
GTGATGTTGCGCGATGGCAGCCTGAACAAGCAGTTCGCCTGGGAGCTCAATGTCTCCGAAGCCACCATCAAGGCCCATAT
CACGGCTGTTTTTCGCAAACTCGGCGTCAAGAACCGCACCCAGGCGGTCATCGCCTTGCAGCAGATGGATATCAAGGACG
ACTGA

Upstream 100 bases:

>100_bases
CCGACGGTCGCTTCACATTTGCACGCCTGCGGGTTTGACCCCCCAAGAGAGCGATGCTAGTTTGATTTTCCAAAACAATC
AGTTAGCAACAATGTGAGCA

Downstream 100 bases:

>100_bases
CCCCTTGCCACCATCAAGGTCCATATCACTCCCGCCTTTCGCAAGCCCAGCGTCAAGACCCGCACCCAGGCGGTCATCGC
CTTGCAACAGATGGATATCA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MDSQFTIVIADDHPLFRGALYQAVHMAINDAQLLEADSINSLTSLLGEHPEVDLLLLDLKMPGANGFSGLAHLRGQYPDL
PIVVVSASEDAAIIQQVLRLGALGFIPKSVPMKELVNALNTVIGGDNWVPAGISLHPESEDGPDFASKLASLTPQQYKVL
VMLRDGSLNKQFAWELNVSEATIKAHITAVFRKLGVKNRTQAVIALQQMDIKDD

Sequences:

>Translated_214_residues
MDSQFTIVIADDHPLFRGALYQAVHMAINDAQLLEADSINSLTSLLGEHPEVDLLLLDLKMPGANGFSGLAHLRGQYPDL
PIVVVSASEDAAIIQQVLRLGALGFIPKSVPMKELVNALNTVIGGDNWVPAGISLHPESEDGPDFASKLASLTPQQYKVL
VMLRDGSLNKQFAWELNVSEATIKAHITAVFRKLGVKNRTQAVIALQQMDIKDD
>Mature_214_residues
MDSQFTIVIADDHPLFRGALYQAVHMAINDAQLLEADSINSLTSLLGEHPEVDLLLLDLKMPGANGFSGLAHLRGQYPDL
PIVVVSASEDAAIIQQVLRLGALGFIPKSVPMKELVNALNTVIGGDNWVPAGISLHPESEDGPDFASKLASLTPQQYKVL
VMLRDGSLNKQFAWELNVSEATIKAHITAVFRKLGVKNRTQAVIALQQMDIKDD

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=28, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788521, Length=206, Percent_Identity=29.6116504854369, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786747, Length=191, Percent_Identity=23.0366492146597, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788546, Length=203, Percent_Identity=28.0788177339901, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788222, Length=199, Percent_Identity=21.608040201005, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787473, Length=217, Percent_Identity=29.4930875576037, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1790102, Length=201, Percent_Identity=28.8557213930348, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788712, Length=191, Percent_Identity=26.1780104712042, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23216; Mature: 23216

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQFTIVIADDHPLFRGALYQAVHMAINDAQLLEADSINSLTSLLGEHPEVDLLLLDLK
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCEEEEEEEE
MPGANGFSGLAHLRGQYPDLPIVVVSASEDAAIIQQVLRLGALGFIPKSVPMKELVNALN
CCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TVIGGDNWVPAGISLHPESEDGPDFASKLASLTPQQYKVLVMLRDGSLNKQFAWELNVSE
HHHCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCH
ATIKAHITAVFRKLGVKNRTQAVIALQQMDIKDD
HHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCC
>Mature Secondary Structure
MDSQFTIVIADDHPLFRGALYQAVHMAINDAQLLEADSINSLTSLLGEHPEVDLLLLDLK
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCEEEEEEEE
MPGANGFSGLAHLRGQYPDLPIVVVSASEDAAIIQQVLRLGALGFIPKSVPMKELVNALN
CCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TVIGGDNWVPAGISLHPESEDGPDFASKLASLTPQQYKVLVMLRDGSLNKQFAWELNVSE
HHHCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCH
ATIKAHITAVFRKLGVKNRTQAVIALQQMDIKDD
HHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]