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The map label for this gene is ybcM [H]

Identifier: 145300023

GI number: 145300023

Start: 3372956

End: 3373759

Strand: Direct

Name: ybcM [H]

Synonym: ASA_3122

Alternate gene names: 145300023

Gene position: 3372956-3373759 (Clockwise)

Preceding gene: 145300022

Following gene: 145300024

Centisome position: 71.73

GC content: 64.93

Gene sequence:

>804_bases
ATGAGCACTACCTTGCTGCAACTGAATCACTATTTCGGGATCCGCGAGCAGCCCCTGCACAGGGTGCTCATCTATGCGCC
GACCCTCATCTGGGTGCAACAGGGCCACAAGCTGCTGTGGTGGCAAGACAGGCGCCTGTCGTTTGACAAGGGGAGCTGGC
TGCTGATCCCGGCAGGCCACCAGCTCACCTTCGTCAATCAGCCCGAGCAGGGCAAGTTCAGTTCCCATGCCCTGACCCTG
CTGGCCCCGCCCCCCGCCGAATGGCTGAGCAGCGCCCCGCCCACCCTGCAGAGGGAGCCGCGCCTTGAGGTGAACCCGGC
GCTGGCATTCTGCTTCGAGCTGGTCTGCTCCATGGCCAGCCGCGTGCTGAGCCAGACCACCCAGACCCAGCTGCTGCACG
GCTTCTATGCCGAGCTGCACGCCGCCAATGCCCTCGACCTGCTGTTTCCCGCCAGCACAATGACGCTCGGGGAGCGGCTG
GCCCGCTACCTCGGCGTGGAGCCAGGCGCCGACCATACACTCGAGACCCTGGCCCCACACTTTGCCATGAGCCGCGCCTC
CCTGGTGCGCAAGCTGGCCGCCGAGGGGCGCAGCTTTCGCCAGCTGCTGACCCAGGTGCGCATGAGCCACGCCCTCACTC
TGCTGCAACAGGCCCTCACTCCGCTGGAGGTGGCCCTCGCTTGCGGTTATGACTCTCCCAGTCGTTTCGCCGCCCGCTTC
AAGCAAGAGTTCGGCCTGACCCCACATCAATATCTGCGCACCTGTCCCTCTGTTAACGCACAGCGCATGGTGAATAGTGA
CTGA

Upstream 100 bases:

>100_bases
CAGATACCCCGCCCGCCATGGTAGGCTACATGCTCAATGCCATGGCGCTGGGCAAGGCCACCCTGACCGCCACCTTCGTC
ACCCCCTAGGAGCCCGCCGG

Downstream 100 bases:

>100_bases
GACAGCCTCTGGCATATCGTGCAAAGTGGTCACGTCCCCCAACTGTGACCGACCCGCCCTGTCATGCCCGCTGACAGATA
CAGTTAGCGGGGTCCGCCGC

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSTTLLQLNHYFGIREQPLHRVLIYAPTLIWVQQGHKLLWWQDRRLSFDKGSWLLIPAGHQLTFVNQPEQGKFSSHALTL
LAPPPAEWLSSAPPTLQREPRLEVNPALAFCFELVCSMASRVLSQTTQTQLLHGFYAELHAANALDLLFPASTMTLGERL
ARYLGVEPGADHTLETLAPHFAMSRASLVRKLAAEGRSFRQLLTQVRMSHALTLLQQALTPLEVALACGYDSPSRFAARF
KQEFGLTPHQYLRTCPSVNAQRMVNSD

Sequences:

>Translated_267_residues
MSTTLLQLNHYFGIREQPLHRVLIYAPTLIWVQQGHKLLWWQDRRLSFDKGSWLLIPAGHQLTFVNQPEQGKFSSHALTL
LAPPPAEWLSSAPPTLQREPRLEVNPALAFCFELVCSMASRVLSQTTQTQLLHGFYAELHAANALDLLFPASTMTLGERL
ARYLGVEPGADHTLETLAPHFAMSRASLVRKLAAEGRSFRQLLTQVRMSHALTLLQQALTPLEVALACGYDSPSRFAARF
KQEFGLTPHQYLRTCPSVNAQRMVNSD
>Mature_266_residues
STTLLQLNHYFGIREQPLHRVLIYAPTLIWVQQGHKLLWWQDRRLSFDKGSWLLIPAGHQLTFVNQPEQGKFSSHALTLL
APPPAEWLSSAPPTLQREPRLEVNPALAFCFELVCSMASRVLSQTTQTQLLHGFYAELHAANALDLLFPASTMTLGERLA
RYLGVEPGADHTLETLAPHFAMSRASLVRKLAAEGRSFRQLLTQVRMSHALTLLQQALTPLEVALACGYDSPSRFAARFK
QEFGLTPHQYLRTCPSVNAQRMVNSD

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=245, Percent_Identity=31.4285714285714, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30009; Mature: 29878

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTLLQLNHYFGIREQPLHRVLIYAPTLIWVQQGHKLLWWQDRRLSFDKGSWLLIPAGH
CCCEEEEHHHHCCCCCCHHHHHHHHHHHHEEHHCCCEEEEEECCCCCCCCCCEEEEECCC
QLTFVNQPEQGKFSSHALTLLAPPPAEWLSSAPPTLQREPRLEVNPALAFCFELVCSMAS
EEEECCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RVLSQTTQTQLLHGFYAELHAANALDLLFPASTMTLGERLARYLGVEPGADHTLETLAPH
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FAMSRASLVRKLAAEGRSFRQLLTQVRMSHALTLLQQALTPLEVALACGYDSPSRFAARF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KQEFGLTPHQYLRTCPSVNAQRMVNSD
HHHHCCCHHHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure 
STTLLQLNHYFGIREQPLHRVLIYAPTLIWVQQGHKLLWWQDRRLSFDKGSWLLIPAGH
CCEEEEHHHHCCCCCCHHHHHHHHHHHHEEHHCCCEEEEEECCCCCCCCCCEEEEECCC
QLTFVNQPEQGKFSSHALTLLAPPPAEWLSSAPPTLQREPRLEVNPALAFCFELVCSMAS
EEEECCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RVLSQTTQTQLLHGFYAELHAANALDLLFPASTMTLGERLARYLGVEPGADHTLETLAPH
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FAMSRASLVRKLAAEGRSFRQLLTQVRMSHALTLLQQALTPLEVALACGYDSPSRFAARF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KQEFGLTPHQYLRTCPSVNAQRMVNSD
HHHHCCCHHHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]