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The map label for this gene is rimM

Identifier: 145296016

GI number: 145296016

Start: 2127556

End: 2128071

Strand: Reverse

Name: rimM

Synonym: cgR_1939

Alternate gene names: 145296016

Gene position: 2128071-2127556 (Counterclockwise)

Preceding gene: 145296018

Following gene: 145296014

Centisome position: 64.21

GC content: 53.88

Gene sequence:

>516_bases
ATGAGCACAGAGCAGGAACTGCAAATCGGAAAAGTTGTAAAATCCCACGGCATTCGGGGTGAAGTCGTGGTGGAATTGAG
CACCGATGATCCAGACATTCGCTTCGCCATTGGGGAAGTTCTCAACGGAAAGCAGGCAGGCAAGGAGCATTCACTGACCA
TCGATGCAGCGCGCATGCACCAAGGTCGACTCTTGGTGAAGTTCGCAGAGGTCCCAGATCGTACCGCTGCTGACTCTTTG
CGTGGAACTCGATTCTTTGCGGCACCTCTTGAGGATGAAGACGATGAGGATGGCTTCTACGACCATGAGTTGGAAAGTCT
GCGCGTCATTCACGAGGGCGAGGATATCGGTGAAGTCACCGGCGTGATGCATGGCCCAGCCGGTGAGATCCTGGAAGTCC
GCCTGACCTCAGGCAAGGAAACACTGATTCCTTTTGTGCACGCCATTGTTCCTGAGGTGGATCTGGAAGAAGGAACCGCA
ACGATCACCCCTCCAGAGGGCTTGTTAGATCTTTAG

Upstream 100 bases:

>100_bases
TAAAGATAAGTATCCACCCATCCTAATAAAAACGATTCCACCGGTATTAAACATTGCTGAAATAGGGCGGATGTGGGCTC
GTGACATAAACTTTCTATAC

Downstream 100 bases:

>100_bases
GCTCCGACAGATTTAATAGTCAGCAGCTCAAGACCATCATTGTCGCATCCATTGAATCCTTCCAGCGGAAGATATGCGGA
TGCGGTTTCACCTGGCGGGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVPDRTAADSL
RGTRFFAAPLEDEDDEDGFYDHELESLRVIHEGEDIGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTA
TITPPEGLLDL

Sequences:

>Translated_171_residues
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVPDRTAADSL
RGTRFFAAPLEDEDDEDGFYDHELESLRVIHEGEDIGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTA
TITPPEGLLDL
>Mature_170_residues
STEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVPDRTAADSLR
GTRFFAAPLEDEDDEDGFYDHELESLRVIHEGEDIGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTAT
ITPPEGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CORGB (A4QFB9)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001138837.1
- ProteinModelPortal:   A4QFB9
- SMR:   A4QFB9
- STRING:   A4QFB9
- GeneID:   4991874
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_1939
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18648; Mature: 18517

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMH
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEHHHHHCCCCCCCCCCEEEEHHHCC
QGRLLVKFAEVPDRTAADSLRGTRFFAAPLEDEDDEDGFYDHELESLRVIHEGEDIGEVT
CCEEEEEEECCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHEEEEECCCCHHHHH
GVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL
HEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
STEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMH
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEHHHHHCCCCCCCCCCEEEEHHHCC
QGRLLVKFAEVPDRTAADSLRGTRFFAAPLEDEDDEDGFYDHELESLRVIHEGEDIGEVT
CCEEEEEEECCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHEEEEECCCCHHHHH
GVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL
HEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA