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The map label for this gene is orn [H]

Identifier: 145295978

GI number: 145295978

Start: 2101169

End: 2101828

Strand: Reverse

Name: orn [H]

Synonym: cgR_1902

Alternate gene names: 145295978

Gene position: 2101828-2101169 (Counterclockwise)

Preceding gene: 145295979

Following gene: 145295977

Centisome position: 63.42

GC content: 52.88

Gene sequence:

>660_bases
ATGAAACCTAAACCCGCGTTCATTGGCCTCGATTTAGAAACCACCGGACTTGATGCCCACTCAGGAGTGATCCTCGAAGT
GGGCATCATCATTTTCGATGACGACTTGATGCCGATTGCAGCACGGTCATGGCTCACGAATGAGCTGGTCGAAAAGGAAT
CTATTGTGTCAGCTCCTGTGGTGGAGGTGATGCATGAAGAATCAGGCCTCTGGGAGGACTTGAAGACTGGTCACACGCAA
CCGCTTAGACAAGTGGAAGCTGAGGCGTCTGCGTGGATCCTCGAAGCAGGTGCAAACAAGCTGCCAATGCTTGGCTCGTC
AGTGACGTTTGATCGCACCTGGTTAGACCACCACATGCCACAGCTGCACCGCATGTTCCACTACCGAAGCGTCGATGCCA
CCTCAGTGTTGCTGGCGTCGACAAGCCTGTATGACTTCATCAACATCAACGACCAACAAACACTTTTGGTCTTGGACATG
CTCGAGCACCTAAAACGCTGGGACCTCAAACCCCACAGAGCACTCTACGACCTATGCCAATCAGCGGCACTCGTAAAAGC
AACCCTCAACGCAGTGGCAAAACCGCCACTTGCACCCCTACCTGAAAGATTCCCTGCACCCGGAGGAATCCCCACAACCC
CAGAAAGAGAAAGCAAATGA

Upstream 100 bases:

>100_bases
GCAGGCTCGTCACAAGACCCGTTGATCACACTCACGCGAATGTCACCCACACATCCAGCAAACCGCCACACGGCAAACGC
ATGTACCGAAGGAGAACACC

Downstream 100 bases:

>100_bases
CCACCCCAAAGCTCAGGTACACCAAGCCACCCTCAATGACCTACCACATCGATGTGTGGTGTGACGGCCCTAAATGCGAC
ATGCAAAGGCTTGAGCACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPVVEVMHEESGLWEDLKTGHTQ
PLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMPQLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDM
LEHLKRWDLKPHRALYDLCQSAALVKATLNAVAKPPLAPLPERFPAPGGIPTTPERESK

Sequences:

>Translated_219_residues
MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPVVEVMHEESGLWEDLKTGHTQ
PLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMPQLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDM
LEHLKRWDLKPHRALYDLCQSAALVKATLNAVAKPPLAPLPERFPAPGGIPTTPERESK
>Mature_219_residues
MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPVVEVMHEESGLWEDLKTGHTQ
PLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMPQLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDM
LEHLKRWDLKPHRALYDLCQSAALVKATLNAVAKPPLAPLPERFPAPGGIPTTPERESK

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 24388; Mature: 24388

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPV
CCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
VEVMHEESGLWEDLKTGHTQPLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMP
HHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHH
QLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDMLEHLKRWDLKPHRALYDLCQ
HHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SAALVKATLNAVAKPPLAPLPERFPAPGGIPTTPERESK
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPV
CCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
VEVMHEESGLWEDLKTGHTQPLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMP
HHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHH
QLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDMLEHLKRWDLKPHRALYDLCQ
HHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SAALVKATLNAVAKPPLAPLPERFPAPGGIPTTPERESK
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]