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The map label for this gene is rbfA

Identifier: 145295888

GI number: 145295888

Start: 2012085

End: 2012534

Strand: Reverse

Name: rbfA

Synonym: cgR_1813

Alternate gene names: 145295888

Gene position: 2012534-2012085 (Counterclockwise)

Preceding gene: 145295889

Following gene: 145295887

Centisome position: 60.72

GC content: 54.67

Gene sequence:

>450_bases
ATGGCTGACAACGCCCGCGCGGCTCGTATGGCAAAGCGCATTCAAACTATCGTGGCCAGCGCCATTGAACGCGATATCAA
GGACCGCCGACTTGAGTTCGTCACAATTACTGATGTGACCATGACCGGTGACCTGCACGATGCAAAGGTGTTTTACACCG
TTCGTGGAGCTTCCATTGAAGAAGAACCAGATCTTGAGGCAGCAGCAGAGGCTCTTCACCGAGCACGCGGCCAGCTGAGG
AAGATCGTTGGCCAGCAGCTGGGTGTTCGGTTTACCCCAACCCTGACTTACAGCATCGATACCGTCCCAGAGGCATCCGC
ACACATGGAAGCTTTGTTGGATCGTGCTCGCAAGCGCGATGAGGAGCTGGCTAAACTGCGCGAAGGCGCAGTGCCTGCAG
GTGATGCAGATCCTTACAAGACTTCATCCAAGTCTGAATCTGAGGAATAA

Upstream 100 bases:

>100_bases
TAGGAATAGCAGGGTAGATAAACTTATTAAAATTTTTCCAATTCAGGGTAGAATTCCAAAAGAATTATTTCGACTCTGTG
AAGATGAGGAGTGGTCCACC

Downstream 100 bases:

>100_bases
CACCAGTGACGGATAATAGTCAGTTTCATGCTGCTTCAGCATTAGTCCGGGCAGCTCACACGGTTAGCGTTGTGGGACAT
CTGCGACCCGATGCTGATGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIEEEPDLEAAAEALHRARGQLR
KIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRDEELAKLREGAVPAGDADPYKTSSKSESEE

Sequences:

>Translated_149_residues
MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIEEEPDLEAAAEALHRARGQLR
KIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRDEELAKLREGAVPAGDADPYKTSSKSESEE
>Mature_148_residues
ADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIEEEPDLEAAAEALHRARGQLRK
IVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRDEELAKLREGAVPAGDADPYKTSSKSESEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CORGB (A4QEZ1)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001138709.1
- ProteinModelPortal:   A4QEZ1
- SMR:   A4QEZ1
- STRING:   A4QEZ1
- GeneID:   4994101
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_1813
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16498; Mature: 16367

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCEEEEEEECCCCC
EEPDLEAAAEALHRARGQLRKIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEEEECCCCCHHHHHHHHHHHHHHHH
EELAKLREGAVPAGDADPYKTSSKSESEE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCEEEEEEECCCCC
EEPDLEAAAEALHRARGQLRKIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEEEECCCCCHHHHHHHHHHHHHHHH
EELAKLREGAVPAGDADPYKTSSKSESEE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA