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The map label for this gene is sigD [H]

Identifier: 145294771

GI number: 145294771

Start: 779284

End: 779625

Strand: Direct

Name: sigD [H]

Synonym: cgR_0719

Alternate gene names: 145294771

Gene position: 779284-779625 (Clockwise)

Preceding gene: 145294770

Following gene: 145294772

Centisome position: 23.51

GC content: 50.29

Gene sequence:

>342_bases
ATGGCGTTTGTCTACGGCATTGCATCTAACAAGGTTGCAGATGCTCACAGGGCGATGTCGAGGGATAAATCGACTCCTAT
TGAGGAAGTCCCAGAAACTTCACCAGATACTTTTACCCCCGAAGACTTTGCGCTGGTCAGCGATGGAAGTAACAGAGTTA
GGGAACTTCTCGATCTACTGAGTGAAAAGGCACGCGACATTCTTATCTTGAGAGTTATCGTTGGTCTTTCCGCAGAAGAA
ACTGCAGAGATGGTGGGCAGCACCCCTGGTGCTGTACGAGTTGCCCAACACCGGGCGCTCACGACACTTCGAAGCACACT
TGAGCAGCAGGAGAACAAGTAA

Upstream 100 bases:

>100_bases
TGGAGGTGGACGGCAGCCAACGGCAGAAGACGTTGCTCAAGAGATCTGTCTGGCAGTAGCTACCTCCATTAAGAACTTTG
TCGACCAGGGTAGGCCGTTC

Downstream 100 bases:

>100_bases
TGACTCGACGTCTAAATGGTGGTGACCAGGATGGCCAAGAACACGTTAATGGGCAGCTAAAGCAGCTGTTCGACGACGAC
GCGTTTTTGACTGACCTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRVRELLDLLSEKARDILILRVIVGLSAEE
TAEMVGSTPGAVRVAQHRALTTLRSTLEQQENK

Sequences:

>Translated_113_residues
MAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRVRELLDLLSEKARDILILRVIVGLSAEE
TAEMVGSTPGAVRVAQHRALTTLRSTLEQQENK
>Mature_112_residues
AFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRVRELLDLLSEKARDILILRVIVGLSAEET
AEMVGSTPGAVRVAQHRALTTLRSTLEQQENK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 12368; Mature: 12237

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRVRELLDLL
CEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
SEKARDILILRVIVGLSAEETAEMVGSTPGAVRVAQHRALTTLRSTLEQQENK
HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRVRELLDLL
EEEEECCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
SEKARDILILRVIVGLSAEETAEMVGSTPGAVRVAQHRALTTLRSTLEQQENK
HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]