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The map label for this gene is ybaK [H]

Identifier: 145294486

GI number: 145294486

Start: 493385

End: 493906

Strand: Direct

Name: ybaK [H]

Synonym: cgR_0441

Alternate gene names: 145294486

Gene position: 493385-493906 (Clockwise)

Preceding gene: 145294485

Following gene: 145294488

Centisome position: 14.89

GC content: 50.38

Gene sequence:

>522_bases
ATGCAGCTAAAATCTGGTTTTATGGCCAAGAAAGTTGATACCTCGAACGCTACCCCCGCGCTTGCTCTGCTTACGGAGAA
ACAGATTCCATTTGAGTTGGATGTTCATGATGTGGATCCGAAATCATTAAAGGGTTTTGCTTTGGATGCTTCCGAAGTGA
TGGGTGTGGAGCCGGAAGTGGTGTTTAAGACGCTGATGGCGGATATCGACGGAGAACATGTCGTAGCGATTGTTCCGGCT
AGCAGCACGCTGAATCTTAAGCAGCTGGCTAAAGCTGGAAAAGGTAAGCACGCCAACATGATGGACCGTAGCCGCGCGCA
GGTCGTTACTGGTTATGTCCCGGGTGGAATCTCACCAATCGGGCAGAAGAATAAACATCGCGTGTTTTTGGATGAGTCTG
CGATTCTCCAGGATCGGATCTATGTCAGTGCGGGGCGCCGAGGTTGGTCGCTGATTATTGCGCCGGATGATGTGCTTTTG
GCAACCGATGGGGTTTATGCAGATATTGCCGATCATTCCTAG

Upstream 100 bases:

>100_bases
TTCCAGAATTCACCGTGCAGTGAAGGAAATTCTCGCTGAGTTTGAATCTTAACAAGCAGAAGCCGCCTTCCATAGACACA
ATGTGGGAGGCGGTTTTTGT

Downstream 100 bases:

>100_bases
AAGAGTTGTTAAGCATAATGAAAATGCCGATCCGGCCTGCCGAGCTTCCGAAAGGGTGACAGACCGGAAAGGTAAAACCC
ACCCCCGCAGGGGTGCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQLKSGFMAKKVDTSNATPALALLTEKQIPFELDVHDVDPKSLKGFALDASEVMGVEPEVVFKTLMADIDGEHVVAIVPA
SSTLNLKQLAKAGKGKHANMMDRSRAQVVTGYVPGGISPIGQKNKHRVFLDESAILQDRIYVSAGRRGWSLIIAPDDVLL
ATDGVYADIADHS

Sequences:

>Translated_173_residues
MQLKSGFMAKKVDTSNATPALALLTEKQIPFELDVHDVDPKSLKGFALDASEVMGVEPEVVFKTLMADIDGEHVVAIVPA
SSTLNLKQLAKAGKGKHANMMDRSRAQVVTGYVPGGISPIGQKNKHRVFLDESAILQDRIYVSAGRRGWSLIIAPDDVLL
ATDGVYADIADHS
>Mature_173_residues
MQLKSGFMAKKVDTSNATPALALLTEKQIPFELDVHDVDPKSLKGFALDASEVMGVEPEVVFKTLMADIDGEHVVAIVPA
SSTLNLKQLAKAGKGKHANMMDRSRAQVVTGYVPGGISPIGQKNKHRVFLDESAILQDRIYVSAGRRGWSLIIAPDDVLL
ATDGVYADIADHS

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=37.8205128205128, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 18611; Mature: 18611

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKSGFMAKKVDTSNATPALALLTEKQIPFELDVHDVDPKSLKGFALDASEVMGVEPEV
CCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECHHHHCCCCHHH
VFKTLMADIDGEHVVAIVPASSTLNLKQLAKAGKGKHANMMDRSRAQVVTGYVPGGISPI
HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
GQKNKHRVFLDESAILQDRIYVSAGRRGWSLIIAPDDVLLATDGVYADIADHS
CCCCCCEEEECCCHHHHCEEEEEECCCCCEEEECCCCEEEEECCEEEECCCCC
>Mature Secondary Structure
MQLKSGFMAKKVDTSNATPALALLTEKQIPFELDVHDVDPKSLKGFALDASEVMGVEPEV
CCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECHHHHCCCCHHH
VFKTLMADIDGEHVVAIVPASSTLNLKQLAKAGKGKHANMMDRSRAQVVTGYVPGGISPI
HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
GQKNKHRVFLDESAILQDRIYVSAGRRGWSLIIAPDDVLLATDGVYADIADHS
CCCCCCEEEECCCHHHHCEEEEEECCCCCEEEECCCCEEEEECCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]