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The map label for this gene is ybiH [C]

Identifier: 138896968

GI number: 138896968

Start: 3444819

End: 3445451

Strand: Reverse

Name: ybiH [C]

Synonym: GTNG_3337

Alternate gene names: 138896968

Gene position: 3445451-3444819 (Counterclockwise)

Preceding gene: 138896969

Following gene: 138896967

Centisome position: 97.05

GC content: 45.81

Gene sequence:

>633_bases
ATGAAAAAACGGGAAGTGATCGCATCGGTCAAAGATGAAAAGCTCGTGAAAAAACGCCGCAACGAAATGATTAAAGGGGC
GATTTCCCTTTTTAAACAAAAAGGTTTCTACCAAACGACAACGAGGGAAATCGCCAAAGCGTCCGGATTTAGCATTGGCA
CACTATATGAGTATATCCGCAAAAAAGAAGATGTCTTGTATTTAGTGTGTGACCGCATTTACGACGAGGTGCGGGAGCGG
ACCGAACAAGACCTTGGCGATCATCATGGCACGATTGAAGGATTGCGGCGTGCGATCGCTCACTATTTTCGTGTCGTTGA
TGAACTCGACGACGAAGTGCTCGTCATGTACCAAGAGTTGAAGGCGTTAAGCAAAGAATCGCTCCCATACGTTCTCAATA
AAGAGCTTGATATGACGGCTATTTTCGAGCATATTTTGCGCACATGCGTCGAAAGCGGTGCGCTGCAGCTTTCTGAAAGT
GAGATTCGCCTCTTTGCCCACAACATTATCGTGCTTGGGCAAATGTGGGCGTTCCGTCGTTGGGCGCTGCGGAAAATGTA
TACGCTCGAAGAATATATTGAATGTCAGACGGAGTTTTTATTAAAGGGGATTATGGAGAAACAGAAAGCTTGA

Upstream 100 bases:

>100_bases
GTTCGGGGGTGTACCGCACGACATGTCTCGTTCTGCCGCAACGGGCAGTCGGGTGGTGCGCCGCCTAGCTGCTAAACGGG
AATGGGGGAGAGGAACGTAA

Downstream 100 bases:

>100_bases
ACAAAGGGGGAGAGATGATGGCGCATATTTATCGTCCGAAGCATCATGTTCGCTTTGTGACAGCGTCCAGCTTGTTTGAC
GGCCATGACGCGTCCATCAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcription Regulator; TetR Family Regulatory Protein

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKKREVIASVKDEKLVKKRRNEMIKGAISLFKQKGFYQTTTREIAKASGFSIGTLYEYIRKKEDVLYLVCDRIYDEVRER
TEQDLGDHHGTIEGLRRAIAHYFRVVDELDDEVLVMYQELKALSKESLPYVLNKELDMTAIFEHILRTCVESGALQLSES
EIRLFAHNIIVLGQMWAFRRWALRKMYTLEEYIECQTEFLLKGIMEKQKA

Sequences:

>Translated_210_residues
MKKREVIASVKDEKLVKKRRNEMIKGAISLFKQKGFYQTTTREIAKASGFSIGTLYEYIRKKEDVLYLVCDRIYDEVRER
TEQDLGDHHGTIEGLRRAIAHYFRVVDELDDEVLVMYQELKALSKESLPYVLNKELDMTAIFEHILRTCVESGALQLSES
EIRLFAHNIIVLGQMWAFRRWALRKMYTLEEYIECQTEFLLKGIMEKQKA
>Mature_210_residues
MKKREVIASVKDEKLVKKRRNEMIKGAISLFKQKGFYQTTTREIAKASGFSIGTLYEYIRKKEDVLYLVCDRIYDEVRER
TEQDLGDHHGTIEGLRRAIAHYFRVVDELDDEVLVMYQELKALSKESLPYVLNKELDMTAIFEHILRTCVESGALQLSES
EIRLFAHNIIVLGQMWAFRRWALRKMYTLEEYIECQTEFLLKGIMEKQKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24753; Mature: 24753

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKREVIASVKDEKLVKKRRNEMIKGAISLFKQKGFYQTTTREIAKASGFSIGTLYEYIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
KKEDVLYLVCDRIYDEVRERTEQDLGDHHGTIEGLRRAIAHYFRVVDELDDEVLVMYQEL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KALSKESLPYVLNKELDMTAIFEHILRTCVESGALQLSESEIRLFAHNIIVLGQMWAFRR
HHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WALRKMYTLEEYIECQTEFLLKGIMEKQKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKREVIASVKDEKLVKKRRNEMIKGAISLFKQKGFYQTTTREIAKASGFSIGTLYEYIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
KKEDVLYLVCDRIYDEVRERTEQDLGDHHGTIEGLRRAIAHYFRVVDELDDEVLVMYQEL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KALSKESLPYVLNKELDMTAIFEHILRTCVESGALQLSESEIRLFAHNIIVLGQMWAFRR
HHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WALRKMYTLEEYIECQTEFLLKGIMEKQKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA