Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 138896863

GI number: 138896863

Start: 3338006

End: 3338722

Strand: Reverse

Name: yvoA [H]

Synonym: GTNG_3228

Alternate gene names: 138896863

Gene position: 3338722-3338006 (Counterclockwise)

Preceding gene: 138896868

Following gene: 138896862

Centisome position: 94.04

GC content: 35.7

Gene sequence:

>717_bases
ATGTACATAGATAAGAAACTACATATTCCCCTTTATCGACAAGTAGAGCGAGTATTAGAAGAAAAAATAAAATCAGATGA
ATGGCCAATTGGACATCAATTGCCAACTGAGCAGGAGTTAGCCGATCTTTTTGATGTTAGTACGATTACAGTAAAAAGAG
CTATTCTAGAACTTGTAAACAAGGGTTATTTATATAGGCAAAGGGGAAAAGGAACTTTTGTATCGAGGCCAATAAAAGAA
CAAAATTTAAATGTTTTCTTTTCTTTAACCACTGAAGATGAGAAACATCCGCATAGGTTGGTCAGTTTTTCTGTTGGCAG
GGCTGACAGAGAGATTACCAATAAGTTGGGTATTGAGAATGATATGACGGTGATCAAGATTAAACGTTTAAAAATCGAAG
GCAATGAGCCAATGGCGCTGGAATATACCTATCTTCCTTATGACAAATGTTGCGGTCTTACACCAGATGATATAAATAAC
GAGCTTATTTACAATATCCTTAAGAAGAAGTTTCGTATCGCCTTAGGAAGAGCCAAACTATTTATAAAGCCTTACATTGC
TACAGACGAAAAAGCAACATTACTACAAGTCGAACCTGGGAGTCCAGTTTTTGAATGGGAGAGGTTTACCTATACAAAAC
AAGAAGAGGTTATCGAGTATTCAAAGTTTTACGTACGCCAAGATAAAGAAGCATATTATACGGAGGTTTATTTTTAA

Upstream 100 bases:

>100_bases
TACACAATTGTTTATCTTTTGGAACACAAAAGATGGAGTGAGTCGAAAAATTATAATTTTATAAACTTATAATTTTGCAT
TGCAATTGAGGAGGATATCA

Downstream 100 bases:

>100_bases
ATCTTTTACTATTCTATATATTGGAGTTTTTACCAATGAGTTATAGATGTATCCCCTAAAAGGTTAACCCCTGATCAAGG
GGTATACATTTATTAAGGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MYIDKKLHIPLYRQVERVLEEKIKSDEWPIGHQLPTEQELADLFDVSTITVKRAILELVNKGYLYRQRGKGTFVSRPIKE
QNLNVFFSLTTEDEKHPHRLVSFSVGRADREITNKLGIENDMTVIKIKRLKIEGNEPMALEYTYLPYDKCCGLTPDDINN
ELIYNILKKKFRIALGRAKLFIKPYIATDEKATLLQVEPGSPVFEWERFTYTKQEEVIEYSKFYVRQDKEAYYTEVYF

Sequences:

>Translated_238_residues
MYIDKKLHIPLYRQVERVLEEKIKSDEWPIGHQLPTEQELADLFDVSTITVKRAILELVNKGYLYRQRGKGTFVSRPIKE
QNLNVFFSLTTEDEKHPHRLVSFSVGRADREITNKLGIENDMTVIKIKRLKIEGNEPMALEYTYLPYDKCCGLTPDDINN
ELIYNILKKKFRIALGRAKLFIKPYIATDEKATLLQVEPGSPVFEWERFTYTKQEEVIEYSKFYVRQDKEAYYTEVYF
>Mature_238_residues
MYIDKKLHIPLYRQVERVLEEKIKSDEWPIGHQLPTEQELADLFDVSTITVKRAILELVNKGYLYRQRGKGTFVSRPIKE
QNLNVFFSLTTEDEKHPHRLVSFSVGRADREITNKLGIENDMTVIKIKRLKIEGNEPMALEYTYLPYDKCCGLTPDDINN
ELIYNILKKKFRIALGRAKLFIKPYIATDEKATLLQVEPGSPVFEWERFTYTKQEEVIEYSKFYVRQDKEAYYTEVYF

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=223, Percent_Identity=32.7354260089686, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082252, Length=238, Percent_Identity=25.2100840336134, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790540, Length=222, Percent_Identity=27.9279279279279, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28133; Mature: 28133

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIDKKLHIPLYRQVERVLEEKIKSDEWPIGHQLPTEQELADLFDVSTITVKRAILELVN
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KGYLYRQRGKGTFVSRPIKEQNLNVFFSLTTEDEKHPHRLVSFSVGRADREITNKLGIEN
CCCEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCC
DMTVIKIKRLKIEGNEPMALEYTYLPYDKCCGLTPDDINNELIYNILKKKFRIALGRAKL
CCEEEEEEEEEECCCCCEEEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEE
FIKPYIATDEKATLLQVEPGSPVFEWERFTYTKQEEVIEYSKFYVRQDKEAYYTEVYF
EEEEEEECCCCEEEEEECCCCCCEEHHHEECCCHHHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MYIDKKLHIPLYRQVERVLEEKIKSDEWPIGHQLPTEQELADLFDVSTITVKRAILELVN
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KGYLYRQRGKGTFVSRPIKEQNLNVFFSLTTEDEKHPHRLVSFSVGRADREITNKLGIEN
CCCEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCC
DMTVIKIKRLKIEGNEPMALEYTYLPYDKCCGLTPDDINNELIYNILKKKFRIALGRAKL
CCEEEEEEEEEECCCCCEEEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEE
FIKPYIATDEKATLLQVEPGSPVFEWERFTYTKQEEVIEYSKFYVRQDKEAYYTEVYF
EEEEEEECCCCEEEEEECCCCCCEEHHHEECCCHHHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]