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The map label for this gene is ymdB [C]

Identifier: 138896835

GI number: 138896835

Start: 3305352

End: 3305828

Strand: Reverse

Name: ymdB [C]

Synonym: GTNG_3198

Alternate gene names: 138896835

Gene position: 3305828-3305352 (Counterclockwise)

Preceding gene: 138896836

Following gene: 138896834

Centisome position: 93.11

GC content: 56.18

Gene sequence:

>477_bases
ATGATTCGCGCGATCGTCGGTGATTTGACGAAGGTGGAAGGGGTCGAGTACATTTGCAATGCCGCCAACGGCATTGGACC
GATGGGCGGCGGAGTGGCGGCGGCGATCCGTCGGGCAGGCGGCCGCGTCATTGAAGAGGAAGCAATCCGCATCTGCCAAG
CGCAAGATCCACAACCAGGGGATTTGTATGTGACTGGAGCAGGGACGTTGCCGTTTCGTGGTGTCATTCATCTCGTGACG
ATGAAGCAGCCCGCAGGGCAGACATCGTATGCGATCGTCCGCCAATGCCTTGAGCGGCTGATCACATATTGTCGGGAGCA
CGGGATTAAGCACGTGGCGCTTCCAGCTTTAGGAACAGGAGTTGGTGGGCTGGATAAAGGGAAAGTGGCAAAGCTGTTTC
GTGAGGTGCTTGAGCCTGTGATGGATGTGGAGTTTGTCGTGGTCGATATCGATGAGTCGTTTATCCAGCAGGTTTAG

Upstream 100 bases:

>100_bases
TTACGCGGCCAAAGATGAGCGACATAATCATGCCGTTGTTCTTTGCGAGTTTTTGCGCCGAATGGGCTGAGAACGAGCGA
ACGACGAGGAGGGATAAGCG

Downstream 100 bases:

>100_bases
TTAAACAAATAAGGAAGAAAAAGGGCCTTGACAACGCTCGGCCCTTCTTTTTTTTGGCAAAGAATAACACGTTTCGTGAT
TCACCATATCATATTATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MIRAIVGDLTKVEGVEYICNAANGIGPMGGGVAAAIRRAGGRVIEEEAIRICQAQDPQPGDLYVTGAGTLPFRGVIHLVT
MKQPAGQTSYAIVRQCLERLITYCREHGIKHVALPALGTGVGGLDKGKVAKLFREVLEPVMDVEFVVVDIDESFIQQV

Sequences:

>Translated_158_residues
MIRAIVGDLTKVEGVEYICNAANGIGPMGGGVAAAIRRAGGRVIEEEAIRICQAQDPQPGDLYVTGAGTLPFRGVIHLVT
MKQPAGQTSYAIVRQCLERLITYCREHGIKHVALPALGTGVGGLDKGKVAKLFREVLEPVMDVEFVVVDIDESFIQQV
>Mature_158_residues
MIRAIVGDLTKVEGVEYICNAANGIGPMGGGVAAAIRRAGGRVIEEEAIRICQAQDPQPGDLYVTGAGTLPFRGVIHLVT
MKQPAGQTSYAIVRQCLERLITYCREHGIKHVALPALGTGVGGLDKGKVAKLFREVLEPVMDVEFVVVDIDESFIQQV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 16900; Mature: 16900

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRAIVGDLTKVEGVEYICNAANGIGPMGGGVAAAIRRAGGRVIEEEAIRICQAQDPQPG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
DLYVTGAGTLPFRGVIHLVTMKQPAGQTSYAIVRQCLERLITYCREHGIKHVALPALGTG
CEEEECCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHCCC
VGGLDKGKVAKLFREVLEPVMDVEFVVVDIDESFIQQV
CCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCC
>Mature Secondary Structure
MIRAIVGDLTKVEGVEYICNAANGIGPMGGGVAAAIRRAGGRVIEEEAIRICQAQDPQPG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
DLYVTGAGTLPFRGVIHLVTMKQPAGQTSYAIVRQCLERLITYCREHGIKHVALPALGTG
CEEEECCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHCCC
VGGLDKGKVAKLFREVLEPVMDVEFVVVDIDESFIQQV
CCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]