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The map label for this gene is yebC [C]

Identifier: 138896161

GI number: 138896161

Start: 2628767

End: 2629510

Strand: Reverse

Name: yebC [C]

Synonym: GTNG_2524

Alternate gene names: 138896161

Gene position: 2629510-2628767 (Counterclockwise)

Preceding gene: 138896162

Following gene: 138896160

Centisome position: 74.06

GC content: 47.04

Gene sequence:

>744_bases
ATGGCTGGACATTCGAAGTGGAAAAATATCCAACGGCGGAAAAATGCTCAAGATGCTAAGCGCGGCAAACTATTTATGAA
ACTGGCGAAAGAAATTTATGTTGCCGCAAAAAACGGCGGTGGTGACCCGGCGGCCAACCCGAGCCTGCGTCTTGTCATTG
AGAAGGCAAAGGCGGCTAATATGCCGGGTGAAAACATTGAACGGGCGATTAAAAAGGCAACGGGGAACCAAGAACATACC
AATTATGAGGAAATCCGTTATGAAGGATACGGACCGGGCGGCGTCGCTGTCATGGTTGTCTGCTTGACCGATAATAAAAA
CCGGACCGCTGCCAACGTGCGTTCAGCATTTTCGAAAAACGGCGGCAACTTGGGGGAAACAGGTTGCGTCTCTTACTTGT
TTGAGCGCAAAGGATTGCTCGTCATCGATCGTGAGCAGCACAACATGGAGGAAGATGAGTTGCTGCTTTTGGCGATTGAG
GCAGGGGCGGAGGAGATGGAAACGACGGACGAATCGTTCGAAATTTATACAACGCCCGAGTCGTTTGAGACGGTAAAAGA
ACAGCTTGAACAGCAAGGATTAACGTTTGCGAGCGCGGAAATTACGATGATTCCGCAAACATATACAACGTTATCAGGCG
ATGAATTGAAAAAGATGTTGAAGTTAATTGATACGCTTGAAGATGATGACGATGTGCAAGAAGTATACCATAACTTGGAT
GAATCAGTGATTGAGGAACAATAA

Upstream 100 bases:

>100_bases
TTACTCGTTTTCCGTTTTCAGCTAGGCGCAGCTGACATTTTCTGCGTTTTTTGCTATAGTAATATCGGAACATTCCGTTG
TGATGAGAGGAGAAAGTTTG

Downstream 100 bases:

>100_bases
CAATCGTCGGCGGCACGCTGGCGATTTTTTATAGATCGAGGTGGCGAAACATCATAACGGGGGAAACAACAGATAGAAAT
GTTGCTCCATCGAACAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAANMPGENIERAIKKATGNQEHT
NYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFSKNGGNLGETGCVSYLFERKGLLVIDREQHNMEEDELLLLAIE
AGAEEMETTDESFEIYTTPESFETVKEQLEQQGLTFASAEITMIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVYHNLD
ESVIEEQ

Sequences:

>Translated_247_residues
MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAANMPGENIERAIKKATGNQEHT
NYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFSKNGGNLGETGCVSYLFERKGLLVIDREQHNMEEDELLLLAIE
AGAEEMETTDESFEIYTTPESFETVKEQLEQQGLTFASAEITMIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVYHNLD
ESVIEEQ
>Mature_246_residues
AGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAANMPGENIERAIKKATGNQEHTN
YEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFSKNGGNLGETGCVSYLFERKGLLVIDREQHNMEEDELLLLAIEA
GAEEMETTDESFEIYTTPESFETVKEQLEQQGLTFASAEITMIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVYHNLDE
SVIEEQ

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=31.9838056680162, Blast_Score=135, Evalue=3e-32,
Organism=Escherichia coli, GI1788171, Length=239, Percent_Identity=51.0460251046025, Blast_Score=251, Evalue=4e-68,
Organism=Escherichia coli, GI1788294, Length=237, Percent_Identity=41.7721518987342, Blast_Score=180, Evalue=6e-47,
Organism=Caenorhabditis elegans, GI17556100, Length=246, Percent_Identity=28.0487804878049, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=34.2205323193916, Blast_Score=121, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=29.7619047619048, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2524_GEOTN (A4IRB5)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126614.1
- ProteinModelPortal:   A4IRB5
- SMR:   A4IRB5
- STRING:   A4IRB5
- GeneID:   4967450
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2524
- NMPDR:   fig|420246.5.peg.2431
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   A4IRB5
- ProtClustDB:   PRK00110
- BioCyc:   GTHE420246:GTNG_2524-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27541; Mature: 27410

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAAN
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEEHHHHCC
MPGENIERAIKKATGNQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFSKN
CCHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCC
GGNLGETGCVSYLFERKGLLVIDREQHNMEEDELLLLAIEAGAEEMETTDESFEIYTTPE
CCCCCHHHHHHHHHHCCCEEEEECHHCCCCCCCEEEEEEECCCHHHHCCCCCEEEEECCH
SFETVKEQLEQQGLTFASAEITMIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVYHNLD
HHHHHHHHHHHCCCEEECCEEEECCCHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ESVIEEQ
HHHHCCC
>Mature Secondary Structure 
AGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAAN
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEEHHHHCC
MPGENIERAIKKATGNQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFSKN
CCHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCC
GGNLGETGCVSYLFERKGLLVIDREQHNMEEDELLLLAIEAGAEEMETTDESFEIYTTPE
CCCCCHHHHHHHHHHCCCEEEEECHHCCCCCCCEEEEEEECCCHHHHCCCCCEEEEECCH
SFETVKEQLEQQGLTFASAEITMIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVYHNLD
HHHHHHHHHHHCCCEEECCEEEECCCHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ESVIEEQ
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA