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The map label for this gene is yrvN [H]

Identifier: 138896137

GI number: 138896137

Start: 2602212

End: 2603507

Strand: Reverse

Name: yrvN [H]

Synonym: GTNG_2500

Alternate gene names: 138896137

Gene position: 2603507-2602212 (Counterclockwise)

Preceding gene: 138896139

Following gene: 138896136

Centisome position: 73.33

GC content: 54.94

Gene sequence:

>1296_bases
ATGCGAAAAACGACGGAACCGTTGGCAGTACGGATGCGGCCGCGGACGATTGATGACATCGTTGGGCAGGAACATATCAT
CGGACCAGAGACGCCGCTTTATAAAATGATTAAGAAAGGGTATGTGCCCTCGCTATTGCTTTACGGGGAGCCGGGGACAG
GGAAGACGTCGCTCGCTTACGCCATCGCCCGCACTGCCGAGCGGGAGCTGATCGCCATCAATGCGACGTCAGCCGGAAAG
AAGGAGATCGAAGAGGCGGCCGAAGCGGCTCGTTGGTCAGGCAATGTCCTTTTGTTTATCGACGAGATTCACCGCTTGAA
TAAGGCGCAGCAAGATGTGCTGCTTCCACATCTTGAATCAGGGCTCGTGACGTTGATCGGGGCGACGACGGAAAATCCGT
TTCATGAGGTCAATCCAGCGATCCGCAGCCGCTGTGGGCAAATTCAGCAATTAAAGCGGCTTAAGCCGGCTGATATACTC
GTGATTTTGAAACGAGCGCTTGCTGACTCGGAACGCGGGGTCGGAGAGACGCCGGTGATCATCGCTGAGGAACTGTTATG
GCGCATTGCCGAGGCGGCCGGTGGGGATGCACGCGCAGCACTCTCTCTTCTTGAGGCGGCGGTCGCCGCTGCTGATGAAC
GCGACGGGTGTTTGTATATTGATGAGAACATCATAGCGTCGTGTACCGCCAATCGAGGGTTTACTCATGACAAATACGGC
GATACATACTATTCGCTGCTTTCCGCGTTTCAAAAAAGTGTGCGCGGCAGCGATGCCGATGCTGCGCTTCATTATTTGGC
GCGCCTGCTTGAAGGAGGGGATTTGGCCGCCGTCTGCCGGCGGTTGCTCGTCATTGCCTACGAAGATATCGGGCTCGCCA
ACCCGATGATGGGGGTGAAAGTGCAGGCAGCCGTGGAGGCAGCGGAGCGGATCGGGCTGCCGGAGGCGCGCATTCCGCTC
GCTGTTGTGACGATTGAACTTTGTTTGAGCCCGAAATCAAACAGCGCCTACAAGGCGCTTGATGCGGCGTTGGCTGACGT
GCGAGCCGGCAAGCTCGGCGAGATTCCGGATCATTTAAAAGATGCTCATTATAAAGGAGCGTCCATACTTGGGCATGGCC
AAGGCTATTTATATCCGCACGATTATCCAAACGGCTGGGTAGCTCAAGCCTATTTACCCGTTTCTATTGAAGGAACTCGC
TATTATGAACCGAAAGAGCATGGCGAGGAGAAATATTATGCCAAAGTGTACCGACGGCTTCAGCAGTTGAAACAAGAGGA
CAATGTTGAGCCGTGA

Upstream 100 bases:

>100_bases
TACTACATAGCACTAAAAGGAGCGGGCGTTTTATGACATGGGCAGTAAGGTTGTATTTGACGAAGCGGCCGCTGTACAAT
GAAACGAAGGAGGGGTCAGC

Downstream 100 bases:

>100_bases
ATGGAAGAAGCATTTATGATATAATAACACAGGCGATTGGCTCAACAGGGGAGGCGCATCCATAATGGCTCATAACGATA
TCCCATGGCTGCGTTGGGAC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MRKTTEPLAVRMRPRTIDDIVGQEHIIGPETPLYKMIKKGYVPSLLLYGEPGTGKTSLAYAIARTAERELIAINATSAGK
KEIEEAAEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLESGLVTLIGATTENPFHEVNPAIRSRCGQIQQLKRLKPADIL
VILKRALADSERGVGETPVIIAEELLWRIAEAAGGDARAALSLLEAAVAAADERDGCLYIDENIIASCTANRGFTHDKYG
DTYYSLLSAFQKSVRGSDADAALHYLARLLEGGDLAAVCRRLLVIAYEDIGLANPMMGVKVQAAVEAAERIGLPEARIPL
AVVTIELCLSPKSNSAYKALDAALADVRAGKLGEIPDHLKDAHYKGASILGHGQGYLYPHDYPNGWVAQAYLPVSIEGTR
YYEPKEHGEEKYYAKVYRRLQQLKQEDNVEP

Sequences:

>Translated_431_residues
MRKTTEPLAVRMRPRTIDDIVGQEHIIGPETPLYKMIKKGYVPSLLLYGEPGTGKTSLAYAIARTAERELIAINATSAGK
KEIEEAAEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLESGLVTLIGATTENPFHEVNPAIRSRCGQIQQLKRLKPADIL
VILKRALADSERGVGETPVIIAEELLWRIAEAAGGDARAALSLLEAAVAAADERDGCLYIDENIIASCTANRGFTHDKYG
DTYYSLLSAFQKSVRGSDADAALHYLARLLEGGDLAAVCRRLLVIAYEDIGLANPMMGVKVQAAVEAAERIGLPEARIPL
AVVTIELCLSPKSNSAYKALDAALADVRAGKLGEIPDHLKDAHYKGASILGHGQGYLYPHDYPNGWVAQAYLPVSIEGTR
YYEPKEHGEEKYYAKVYRRLQQLKQEDNVEP
>Mature_431_residues
MRKTTEPLAVRMRPRTIDDIVGQEHIIGPETPLYKMIKKGYVPSLLLYGEPGTGKTSLAYAIARTAERELIAINATSAGK
KEIEEAAEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLESGLVTLIGATTENPFHEVNPAIRSRCGQIQQLKRLKPADIL
VILKRALADSERGVGETPVIIAEELLWRIAEAAGGDARAALSLLEAAVAAADERDGCLYIDENIIASCTANRGFTHDKYG
DTYYSLLSAFQKSVRGSDADAALHYLARLLEGGDLAAVCRRLLVIAYEDIGLANPMMGVKVQAAVEAAERIGLPEARIPL
AVVTIELCLSPKSNSAYKALDAALADVRAGKLGEIPDHLKDAHYKGASILGHGQGYLYPHDYPNGWVAQAYLPVSIEGTR
YYEPKEHGEEKYYAKVYRRLQQLKQEDNVEP

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=35.9908883826879, Blast_Score=243, Evalue=2e-64,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=32.3462414578588, Blast_Score=194, Evalue=1e-49,
Organism=Escherichia coli, GI1787119, Length=436, Percent_Identity=41.2844036697248, Blast_Score=305, Evalue=4e-84,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=38.2978723404255, Blast_Score=252, Evalue=8e-68,
Organism=Saccharomyces cerevisiae, GI6324039, Length=267, Percent_Identity=26.9662921348315, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47188; Mature: 47188

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTTEPLAVRMRPRTIDDIVGQEHIIGPETPLYKMIKKGYVPSLLLYGEPGTGKTSLAY
CCCCCCCCEEEECCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHH
AIARTAERELIAINATSAGKKEIEEAAEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLES
HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
GLVTLIGATTENPFHEVNPAIRSRCGQIQQLKRLKPADILVILKRALADSERGVGETPVI
CEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHH
IAEELLWRIAEAAGGDARAALSLLEAAVAAADERDGCLYIDENIIASCTANRGFTHDKYG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCCCC
DTYYSLLSAFQKSVRGSDADAALHYLARLLEGGDLAAVCRRLLVIAYEDIGLANPMMGVK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
VQAAVEAAERIGLPEARIPLAVVTIELCLSPKSNSAYKALDAALADVRAGKLGEIPDHLK
HHHHHHHHHHCCCCCCCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
DAHYKGASILGHGQGYLYPHDYPNGWVAQAYLPVSIEGTRYYEPKEHGEEKYYAKVYRRL
HHCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHCCHHHHHHHHHHH
QQLKQEDNVEP
HHHHHHCCCCC
>Mature Secondary Structure
MRKTTEPLAVRMRPRTIDDIVGQEHIIGPETPLYKMIKKGYVPSLLLYGEPGTGKTSLAY
CCCCCCCCEEEECCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHH
AIARTAERELIAINATSAGKKEIEEAAEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLES
HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
GLVTLIGATTENPFHEVNPAIRSRCGQIQQLKRLKPADILVILKRALADSERGVGETPVI
CEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHH
IAEELLWRIAEAAGGDARAALSLLEAAVAAADERDGCLYIDENIIASCTANRGFTHDKYG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCCCC
DTYYSLLSAFQKSVRGSDADAALHYLARLLEGGDLAAVCRRLLVIAYEDIGLANPMMGVK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
VQAAVEAAERIGLPEARIPLAVVTIELCLSPKSNSAYKALDAALADVRAGKLGEIPDHLK
HHHHHHHHHHCCCCCCCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
DAHYKGASILGHGQGYLYPHDYPNGWVAQAYLPVSIEGTRYYEPKEHGEEKYYAKVYRRL
HHCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHCCHHHHHHHHHHH
QQLKQEDNVEP
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]