Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 138896124

GI number: 138896124

Start: 2589884

End: 2590300

Strand: Reverse

Name: yqgF [C]

Synonym: GTNG_2487

Alternate gene names: 138896124

Gene position: 2590300-2589884 (Counterclockwise)

Preceding gene: 138896125

Following gene: 138896123

Centisome position: 72.96

GC content: 58.51

Gene sequence:

>417_bases
ATGCGAACGTTAGGACTAGATCTCGGAACGAAAACGCTCGGCGTCGCCGTCAGCGACGAATTCGGTTGGACGGCGCAAGG
CTTGGAGACGATCGCCATCGATGAGGAGCGCGGCCACTATGGTTTCGAACGGCTGCGCGCCATCATCGACGAATATGGTG
TCGATACGATCGTTGTCGGATGGCCGAAAAACATGAACGGCACGCTCGGGCCGCGCGCCGAGGCGAGCGAGCGGTTTGCT
GCCAAGCTGCGTGAGGAGTTTTCTTTGCCGGTCGTGCTTTGGGATGAGCGGCTGTCGACGATGGCTGCCGAGCGCATGCT
GATCGCTGCCGATGTGAGCCGGAAAAAGCGGCGGAAAGTGATCGACAAAATGGCAGCGGCCGTCATTTTGCAATCGTATT
TGGACAGTAAACGGTGA

Upstream 100 bases:

>100_bases
CCATAAAGATGCGCGCACGCTCATCCGCAAAATTGAGCGCGACGAATTAATCGAAGAATTGGTGAAATTCTATTTACAGG
GACAACGAAAGGGTTAACCG

Downstream 100 bases:

>100_bases
GTAGGAGGAGAATATCAATGGAACATGGAGACCGTCATATTACCGTTGTCGATGAACAAGGCAACGAGCAGCTGTGCGAA
ATTTTGTTTACGTTTGAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MRTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGWPKNMNGTLGPRAEASERFA
AKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDKMAAAVILQSYLDSKR

Sequences:

>Translated_138_residues
MRTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGWPKNMNGTLGPRAEASERFA
AKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDKMAAAVILQSYLDSKR
>Mature_138_residues
MRTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGWPKNMNGTLGPRAEASERFA
AKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDKMAAAVILQSYLDSKR

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=34.5864661654135, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15458; Mature: 15458

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVG
CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
WPKNMNGTLGPRAEASERFAAKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAAVILQSYLDSKR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVG
CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
WPKNMNGTLGPRAEASERFAAKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAAVILQSYLDSKR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA