Click here to switch to the map view.

The map label for this gene is yrrO [H]

Identifier: 138896119

GI number: 138896119

Start: 2585077

End: 2586348

Strand: Reverse

Name: yrrO [H]

Synonym: GTNG_2482

Alternate gene names: 138896119

Gene position: 2586348-2585077 (Counterclockwise)

Preceding gene: 138896120

Following gene: 138896118

Centisome position: 72.85

GC content: 50.94

Gene sequence:

>1272_bases
ATGTTGCTGAAAAATGAACGCATTTCCGAGATCGTTGACGGCAAGCGCGTCATCGTAAAAAAGCCGGAGTTGCTCGCGCC
GGCCGGCAACTTGGAAAAGCTGAAAATCGCCGTTCATTACGGTGCGGACGCCGTCTTTATCGGCGGTCAGGAATACAGTT
TGCGGGCCAACGCTGACAACTTTACGATTGAGGAAATTCGCGAAGGAGTGGAATTTGCCAATCAGTACGGGGCAAAAGTG
TACGTAACGGCCAACATTTACGCGCATAACGAAAACATTCCCGGCCTTGACGACTATTTGCGGGCACTAGAAGATGCTGG
CGTTCACGGCATTATCGTCGCCGATCCACTCATCATCGAAACAGCGCGCCGAGTGGCGCCGAAGCTCGAAGTGCATTTGA
GCACACAGCAGTCGCTTGCCAACTGGAAAGCGGTCCAATTTTGGAAAGAGGAAGGGCTCGAGCGAGTTGTGCTTGCCCGC
GAAGTAAGTGCTGAAGAAATTCGGCAAATTAAGGAGAAAGTCGATATTGAAATCGAGGCATTCATCCATGGAGCGATGTG
TTCCGCCTACTCGGGCCGTTGTGTATTGAGCAACCATATGACCGCTCGTGACTCGAACCGTGGCGGGTGCTGTCAGTCAT
GCCGATGGGATTACGATTTGTACCAGCTGTCTGATGATGGCCGCGAAATCCCTCTGTTTTCTGAAAATGACGCGCCGTTT
GCCATGAGCGCGAAAGATTTAAACTTGATCCGCGCCATTCCGGCGATGATTGAACTTGGCGTCGACAGCTTGAAAATTGA
AGGACGGATGAAATCGATCCATTACGTGGCGACGGTCGTCAGCGTATATCGGAAAGTGATCGACGCTTACTGTGCTGACC
CCGACCATTTCACGATTCGTGAAGAGTGGGTGCGTGAGCTCGACAAATGTGCCAACCGTGAAACGGCTTCGTCGTTTTTT
GAAGGCTTTCCTGACTATACAAACCATATGTATGGCACGCACAGCCGAAAAACGACGCATGAGTTTGCCGGCTTGGTGCT
TGATTACGACCGGGAGACGGGTATCGCCACCATCCAACAGCGCAACCATTTTAAACCGGGCGACGAAGTCGAATTTTTTG
GTCCGGAAATTGAAAACTTTACCCAAGTCATTGAAAAAATTTGGGATGAAGACGGCAACGAGCTTGATGCAGCGCGCCAT
CCGCTGCAAATCGTCAAGGTTCCAGTCAAGCGCCCTCTCTTCCCATACAACATGATGAGAAAGGAGAATTAA

Upstream 100 bases:

>100_bases
ATTTGCTCGCTGCCGTTGAAGCGCTCCAGCCGCCGCACCGCCGAATTGATACCGGATTTTTCTTCAAAGAAACGATTTAT
TGAAAAAGGAGGGAAACGAC

Downstream 100 bases:

>100_bases
GATGGCGAAGAAACCCGTTGTCATCGGCGTTGCCGGCGGCTCCGGTTCAGGGAAAACGAGCGTCGCCCGCGCGATTTACG
ATCATTTCGGCGACCGCTCG

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MLLKNERISEIVDGKRVIVKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYSLRANADNFTIEEIREGVEFANQYGAKV
YVTANIYAHNENIPGLDDYLRALEDAGVHGIIVADPLIIETARRVAPKLEVHLSTQQSLANWKAVQFWKEEGLERVVLAR
EVSAEEIRQIKEKVDIEIEAFIHGAMCSAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQLSDDGREIPLFSENDAPF
AMSAKDLNLIRAIPAMIELGVDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPDHFTIREEWVRELDKCANRETASSFF
EGFPDYTNHMYGTHSRKTTHEFAGLVLDYDRETGIATIQQRNHFKPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARH
PLQIVKVPVKRPLFPYNMMRKEN

Sequences:

>Translated_423_residues
MLLKNERISEIVDGKRVIVKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYSLRANADNFTIEEIREGVEFANQYGAKV
YVTANIYAHNENIPGLDDYLRALEDAGVHGIIVADPLIIETARRVAPKLEVHLSTQQSLANWKAVQFWKEEGLERVVLAR
EVSAEEIRQIKEKVDIEIEAFIHGAMCSAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQLSDDGREIPLFSENDAPF
AMSAKDLNLIRAIPAMIELGVDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPDHFTIREEWVRELDKCANRETASSFF
EGFPDYTNHMYGTHSRKTTHEFAGLVLDYDRETGIATIQQRNHFKPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARH
PLQIVKVPVKRPLFPYNMMRKEN
>Mature_423_residues
MLLKNERISEIVDGKRVIVKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYSLRANADNFTIEEIREGVEFANQYGAKV
YVTANIYAHNENIPGLDDYLRALEDAGVHGIIVADPLIIETARRVAPKLEVHLSTQQSLANWKAVQFWKEEGLERVVLAR
EVSAEEIRQIKEKVDIEIEAFIHGAMCSAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQLSDDGREIPLFSENDAPF
AMSAKDLNLIRAIPAMIELGVDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPDHFTIREEWVRELDKCANRETASSFF
EGFPDYTNHMYGTHSRKTTHEFAGLVLDYDRETGIATIQQRNHFKPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARH
PLQIVKVPVKRPLFPYNMMRKEN

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=437, Percent_Identity=34.0961098398169, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI87081910, Length=267, Percent_Identity=38.9513108614232, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1789548, Length=344, Percent_Identity=31.3953488372093, Blast_Score=147, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 48075; Mature: 48075

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKNERISEIVDGKRVIVKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYSLRANADN
CCCCCHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCCEEEECCCEEEEEECCCC
FTIEEIREGVEFANQYGAKVYVTANIYAHNENIPGLDDYLRALEDAGVHGIIVADPLIIE
CCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHH
TARRVAPKLEVHLSTQQSLANWKAVQFWKEEGLERVVLAREVSAEEIRQIKEKVDIEIEA
HHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCEEEEH
FIHGAMCSAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQLSDDGREIPLFSENDAPF
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCE
AMSAKDLNLIRAIPAMIELGVDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPDHFTIR
EECHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHH
EEWVRELDKCANRETASSFFEGFPDYTNHMYGTHSRKTTHEFAGLVLDYDRETGIATIQQ
HHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHCEEEEECCCCCCEEEHH
RNHFKPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKVPVKRPLFPYNMMR
CCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEECCCCCCCCHHHHC
KEN
CCC
>Mature Secondary Structure
MLLKNERISEIVDGKRVIVKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYSLRANADN
CCCCCHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCCEEEECCCEEEEEECCCC
FTIEEIREGVEFANQYGAKVYVTANIYAHNENIPGLDDYLRALEDAGVHGIIVADPLIIE
CCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHH
TARRVAPKLEVHLSTQQSLANWKAVQFWKEEGLERVVLAREVSAEEIRQIKEKVDIEIEA
HHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCEEEEH
FIHGAMCSAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQLSDDGREIPLFSENDAPF
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCE
AMSAKDLNLIRAIPAMIELGVDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPDHFTIR
EECHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHH
EEWVRELDKCANRETASSFFEGFPDYTNHMYGTHSRKTTHEFAGLVLDYDRETGIATIQQ
HHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHCEEEEECCCCCCEEEHH
RNHFKPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKVPVKRPLFPYNMMR
CCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEECCCCCCCCHHHHC
KEN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]