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The map label for this gene is deoC [H]

Identifier: 138896072

GI number: 138896072

Start: 2541961

End: 2542632

Strand: Reverse

Name: deoC [H]

Synonym: GTNG_2435

Alternate gene names: 138896072

Gene position: 2542632-2541961 (Counterclockwise)

Preceding gene: 138896073

Following gene: 138896070

Centisome position: 71.62

GC content: 56.4

Gene sequence:

>672_bases
ATGACGGTGAATATTGCTAAAATGATCGATCATACGTTGCTTAAGCCAGAAGCGACGGAAGAGCAAATCATTCAACTATG
CGACGAAGCAAAGCAACACGGCTTCGCCTCGGTGTGCGTCAACCCAGCGTGGGTGAAAACAGCGGCACGCGAGCTTTCCG
ACACTGATGTCCGCGTCTGCACGGTCATCGGCTTTCCGCTTGGAGCGACGACGCCGGAAACAAAGGCGTTTGAAACGAAC
AACGCTATCGAAAACGGCGCCCGCGAAGTCGATATGGTAATCAACATCGGCGCGTTAAAAAGTGGTAACGATGAACTCGT
TGAGCGCGACATTCGTGCGGTTGTTGAGGCGGCGTCCGGGAAAGCGCTTGTGAAAGTGATCATCGAAACGGCCTTGTTGA
CTGATGAGGAAAAAGTGCGCGCCTGCCAATTGGCGGTGAAAGCGGGCGCCGATTACGTAAAAACGTCGACCGGATTCTCA
GGCGGCGGAGCGACGGTCGAAGACGTGGCGCTGATGCGCCGGACAGTTGGCGATAAAGCAGGTGTCAAAGCCTCAGGAGG
CGTCCGCGACCGAAAAACAGCCGAAGCGATGATTGAAGCTGGGGCCACGCGCATTGGGACGAGCTCCGGGGTGGCGATCG
TCAGCGGCCAAACCGGCGGCGCTGACTATTAA

Upstream 100 bases:

>100_bases
ACAATATAGATGGTGGCTAGTTTTTGTTGCAAGGACATGGTATGATGGTAGACGTCAGACCTTTGTTTAATGAAAGAGCG
GGAGAAAGGAGCGACTTTCC

Downstream 100 bases:

>100_bases
GTCCGCCTGCGGGCGTGCAAAAATAAAATAGCCGTCTCAATGGCGCCGACAAACGGCAAGGCGGCGACAGAACAAATGAT
GTTAAACAAGACGCTTACAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTVNIAKMIDHTLLKPEATEEQIIQLCDEAKQHGFASVCVNPAWVKTAARELSDTDVRVCTVIGFPLGATTPETKAFETN
NAIENGAREVDMVINIGALKSGNDELVERDIRAVVEAASGKALVKVIIETALLTDEEKVRACQLAVKAGADYVKTSTGFS
GGGATVEDVALMRRTVGDKAGVKASGGVRDRKTAEAMIEAGATRIGTSSGVAIVSGQTGGADY

Sequences:

>Translated_223_residues
MTVNIAKMIDHTLLKPEATEEQIIQLCDEAKQHGFASVCVNPAWVKTAARELSDTDVRVCTVIGFPLGATTPETKAFETN
NAIENGAREVDMVINIGALKSGNDELVERDIRAVVEAASGKALVKVIIETALLTDEEKVRACQLAVKAGADYVKTSTGFS
GGGATVEDVALMRRTVGDKAGVKASGGVRDRKTAEAMIEAGATRIGTSSGVAIVSGQTGGADY
>Mature_222_residues
TVNIAKMIDHTLLKPEATEEQIIQLCDEAKQHGFASVCVNPAWVKTAARELSDTDVRVCTVIGFPLGATTPETKAFETNN
AIENGAREVDMVINIGALKSGNDELVERDIRAVVEAASGKALVKVIIETALLTDEEKVRACQLAVKAGADYVKTSTGFSG
GGATVEDVALMRRTVGDKAGVKASGGVRDRKTAEAMIEAGATRIGTSSGVAIVSGQTGGADY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=218, Percent_Identity=33.4862385321101, Blast_Score=81, Evalue=9e-16,
Organism=Escherichia coli, GI1790841, Length=204, Percent_Identity=34.8039215686275, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23296; Mature: 23164

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVNIAKMIDHTLLKPEATEEQIIQLCDEAKQHGFASVCVNPAWVKTAARELSDTDVRVC
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCEEEE
TVIGFPLGATTPETKAFETNNAIENGAREVDMVINIGALKSGNDELVERDIRAVVEAASG
EEEECCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
KALVKVIIETALLTDEEKVRACQLAVKAGADYVKTSTGFSGGGATVEDVALMRRTVGDKA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCC
GVKASGGVRDRKTAEAMIEAGATRIGTSSGVAIVSGQTGGADY
CCCCCCCCCHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
TVNIAKMIDHTLLKPEATEEQIIQLCDEAKQHGFASVCVNPAWVKTAARELSDTDVRVC
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCEEEE
TVIGFPLGATTPETKAFETNNAIENGAREVDMVINIGALKSGNDELVERDIRAVVEAASG
EEEECCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
KALVKVIIETALLTDEEKVRACQLAVKAGADYVKTSTGFSGGGATVEDVALMRRTVGDKA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCC
GVKASGGVRDRKTAEAMIEAGATRIGTSSGVAIVSGQTGGADY
CCCCCCCCCHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA