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The map label for this gene is soxB [H]

Identifier: 138895924

GI number: 138895924

Start: 2400547

End: 2401773

Strand: Direct

Name: soxB [H]

Synonym: GTNG_2283

Alternate gene names: 138895924

Gene position: 2400547-2401773 (Clockwise)

Preceding gene: 138895906

Following gene: 138895925

Centisome position: 67.61

GC content: 43.36

Gene sequence:

>1227_bases
ATGGGAGATATGCCAAAGACAGCTGATGTAATCATCATCGGCGGAGGGCTCATGGGTTGTAGCACCGCGTACGAACTAGC
CAAAAGAAATGTGAAAAACATCGTCGTTTTGGAAAAGAAATCGATTGGCTCAGGAGCAACCGGGCAATCGAGCGGTGTTT
TGCGTGGGCATTACAGTTACGAAATTCTTACACGAATGGCTGTCCAGAGTCTAGAAACATTCAAATATGCTAACGAAATT
TTAGGCAGTGATGTTGGATATCAACCAGTAGGATATTTGTTTGGGGTTGATTATGAAAATATCGATACACTGAAAAAGAA
TGTAGAAATGCAGCGACGAAACGGTGTCAACACAAGGATGGTATCCAAGGAGGAAGTCAAAAAGGAAATTTGGCCCCACA
TTGATACGGATCAATTTGGTGCGTTTTCCTACGAACCTGAAGGTGGGTACGGTGACCCCGTCCTTACCAATCAAGCGTAT
GCCAATGCGGCGAGAGCATTAGGGGTTACGATCAAACAGTATTGCGGAGTGAAACAGATCCTTGTTGACAAAGACGGAAG
CTCCGTTATTGGCGTCGAAACAATGGATAACCAAACGATCTATTCCCCCTGCGTTATTGTAGCTGCTGGAATTGGCACGC
ATCTATTAATGAAAAATATAGGAATAGATGTACCGATTAAAGGGCAACGCGCCCAACTTGTGTATATTTCCCCAGGAGTA
CCTATGGGAATTGTTCCTTCTTTCGGTGATTTCAAACACGATCAATATATTAAACCTGAGGTGAGCAGTGGTCACTTACT
ATTGGGAAACGCTGATCATTCCGACCCGCAATATATAGAGCCGGCTGACTACGATGCGGATAACTATCCTAAACACGCAA
CTGAAAAAGCCATTGAAAAGGCCATTATAAAATTTCTTAGCGCCTTCCCATCGTTGGATCAAGCAAAGCTGCTGACAAGT
TACTCAGCTGCTTATGAAATGACTCCGGATGGAATTCCTTTTATTTGCCCTGCACCTATAGAAGGGATTTATCTTTGTGC
TGGATTCAGCGGGCATGGTTTTAAAATTACACCAGTTGTCGGAAAACTGACGGCAGATATGGTGTTACAAGGACAAAGTC
AACAAGAAGGCATTAGTCTAGCTCCTTTCCGATTAACCCGCTTTGAAGAAAACGACTTACTTAAACCAGAACATCCATAT
TCCACTACCGTTAATCACCATGTGTAA

Upstream 100 bases:

>100_bases
ATGGCCGATGATCTTCTCCCTCGCCAACAAGTATGATGTTTTTGAAAAAACAGAAAATAACGATTCCACACTAATTCACA
AAAGGGAGGCGAAAGCAAAA

Downstream 100 bases:

>100_bases
ATGATACAACGTAAAGGAGGACTGAAGGATGAATATCATCGTTCTTATGAAACAAACATTCGATACAGAAGAAAAAATAA
CTATACAAAACGGCCAAATT

Product: SoxB-like sarcosine oxidase subunit beta related

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MGDMPKTADVIIIGGGLMGCSTAYELAKRNVKNIVVLEKKSIGSGATGQSSGVLRGHYSYEILTRMAVQSLETFKYANEI
LGSDVGYQPVGYLFGVDYENIDTLKKNVEMQRRNGVNTRMVSKEEVKKEIWPHIDTDQFGAFSYEPEGGYGDPVLTNQAY
ANAARALGVTIKQYCGVKQILVDKDGSSVIGVETMDNQTIYSPCVIVAAGIGTHLLMKNIGIDVPIKGQRAQLVYISPGV
PMGIVPSFGDFKHDQYIKPEVSSGHLLLGNADHSDPQYIEPADYDADNYPKHATEKAIEKAIIKFLSAFPSLDQAKLLTS
YSAAYEMTPDGIPFICPAPIEGIYLCAGFSGHGFKITPVVGKLTADMVLQGQSQQEGISLAPFRLTRFEENDLLKPEHPY
STTVNHHV

Sequences:

>Translated_408_residues
MGDMPKTADVIIIGGGLMGCSTAYELAKRNVKNIVVLEKKSIGSGATGQSSGVLRGHYSYEILTRMAVQSLETFKYANEI
LGSDVGYQPVGYLFGVDYENIDTLKKNVEMQRRNGVNTRMVSKEEVKKEIWPHIDTDQFGAFSYEPEGGYGDPVLTNQAY
ANAARALGVTIKQYCGVKQILVDKDGSSVIGVETMDNQTIYSPCVIVAAGIGTHLLMKNIGIDVPIKGQRAQLVYISPGV
PMGIVPSFGDFKHDQYIKPEVSSGHLLLGNADHSDPQYIEPADYDADNYPKHATEKAIEKAIIKFLSAFPSLDQAKLLTS
YSAAYEMTPDGIPFICPAPIEGIYLCAGFSGHGFKITPVVGKLTADMVLQGQSQQEGISLAPFRLTRFEENDLLKPEHPY
STTVNHHV
>Mature_407_residues
GDMPKTADVIIIGGGLMGCSTAYELAKRNVKNIVVLEKKSIGSGATGQSSGVLRGHYSYEILTRMAVQSLETFKYANEIL
GSDVGYQPVGYLFGVDYENIDTLKKNVEMQRRNGVNTRMVSKEEVKKEIWPHIDTDQFGAFSYEPEGGYGDPVLTNQAYA
NAARALGVTIKQYCGVKQILVDKDGSSVIGVETMDNQTIYSPCVIVAAGIGTHLLMKNIGIDVPIKGQRAQLVYISPGVP
MGIVPSFGDFKHDQYIKPEVSSGHLLLGNADHSDPQYIEPADYDADNYPKHATEKAIEKAIIKFLSAFPSLDQAKLLTSY
SAAYEMTPDGIPFICPAPIEGIYLCAGFSGHGFKITPVVGKLTADMVLQGQSQQEGISLAPFRLTRFEENDLLKPEHPYS
TTVNHHV

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=388, Percent_Identity=25.7731958762887, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI21361378, Length=388, Percent_Identity=25.7731958762887, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI60499001, Length=403, Percent_Identity=26.7990074441687, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI24797151, Length=394, Percent_Identity=23.8578680203046, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI8923708, Length=422, Percent_Identity=24.4075829383886, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994052, Length=424, Percent_Identity=23.1132075471698, Blast_Score=78, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71994045, Length=417, Percent_Identity=23.2613908872902, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32563613, Length=391, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI20130091, Length=395, Percent_Identity=25.8227848101266, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI20129729, Length=408, Percent_Identity=25.7352941176471, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI28571104, Length=400, Percent_Identity=24.25, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 44481; Mature: 44350

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDMPKTADVIIIGGGLMGCSTAYELAKRNVKNIVVLEKKSIGSGATGQSSGVLRGHYSY
CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECHHH
EILTRMAVQSLETFKYANEILGSDVGYQPVGYLFGVDYENIDTLKKNVEMQRRNGVNTRM
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEE
VSKEEVKKEIWPHIDTDQFGAFSYEPEGGYGDPVLTNQAYANAARALGVTIKQYCGVKQI
ECHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEE
LVDKDGSSVIGVETMDNQTIYSPCVIVAAGIGTHLLMKNIGIDVPIKGQRAQLVYISPGV
EEECCCCEEEEEEECCCCEECCCCEEEEHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
PMGIVPSFGDFKHDQYIKPEVSSGHLLLGNADHSDPQYIEPADYDADNYPKHATEKAIEK
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AIIKFLSAFPSLDQAKLLTSYSAAYEMTPDGIPFICPAPIEGIYLCAGFSGHGFKITPVV
HHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCCEECCCCCCCEEEEECCCCCCEEEEEEH
GKLTADMVLQGQSQQEGISLAPFRLTRFEENDLLKPEHPYSTTVNHHV
HHHHHHHHCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GDMPKTADVIIIGGGLMGCSTAYELAKRNVKNIVVLEKKSIGSGATGQSSGVLRGHYSY
CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECHHH
EILTRMAVQSLETFKYANEILGSDVGYQPVGYLFGVDYENIDTLKKNVEMQRRNGVNTRM
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEE
VSKEEVKKEIWPHIDTDQFGAFSYEPEGGYGDPVLTNQAYANAARALGVTIKQYCGVKQI
ECHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEE
LVDKDGSSVIGVETMDNQTIYSPCVIVAAGIGTHLLMKNIGIDVPIKGQRAQLVYISPGV
EEECCCCEEEEEEECCCCEECCCCEEEEHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
PMGIVPSFGDFKHDQYIKPEVSSGHLLLGNADHSDPQYIEPADYDADNYPKHATEKAIEK
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AIIKFLSAFPSLDQAKLLTSYSAAYEMTPDGIPFICPAPIEGIYLCAGFSGHGFKITPVV
HHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCCEECCCCCCCEEEEECCCCCCEEEEEEH
GKLTADMVLQGQSQQEGISLAPFRLTRFEENDLLKPEHPYSTTVNHHV
HHHHHHHHCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]