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The map label for this gene is ybdK [H]

Identifier: 138895606

GI number: 138895606

Start: 2083386

End: 2084732

Strand: Direct

Name: ybdK [H]

Synonym: GTNG_1959

Alternate gene names: 138895606

Gene position: 2083386-2084732 (Clockwise)

Preceding gene: 138895605

Following gene: 138895607

Centisome position: 58.68

GC content: 46.62

Gene sequence:

>1347_bases
ATGAAAAGCGTAAAACGATTGCGGTCGCTGACGGCAAAATATATGGCCATTATTTTAACCGCTCTGTTTCTCATCTATCT
TCTTATCATCGGAACTAGCCTTTTGGTCTTCAATGTCTATGACCATAAAGACCCAGAAACGTTGCAGATCGAAAAAGCCT
GGCACCAGGATGCCCGTAGTCTCAAAAACCCCGGAAGCGAAGATATCAACCGGATGTTTGAAAAATGGCAAAACCGTTAT
CCGAAAGCGCGCTTGTTTTGGGTGGACAGCAACGGCCGGCTCGCCGCCGGGAGGAACCTTGCTGCGGATATTCCGAAACA
TTGGAATGCCGCCTATACCGCCAACTTCATCAAAGCGCGTTATGACAACGACCCTTTTACGGTCATTGCCTTTCCAAACA
ATGATGCATCCTATGGATTCGTCGTTTTTGAAATCGAGCGGAAGCTGCTTCAACCCGCATTTACTGAAGCCAATGCCGAC
TTTATGTATTTTATTGTTCCCGGGGGAATTGTGTTATTTGTGACCGTCTCGTATTTGTTTTTCTTGGGGATCCGCAAACG
TCTCCTTTATTTGCAACAGGCCATGGAGATACGGGACGTGGACGGATTGCCAGTAGCCATCACGGTGAGAAAACAGGATG
AAATCGGCCAACTGGAGATGGCCTTCAATCAAATGGTGGATGAGCTCCGAGAAAGCCGGAAACGGGAAGAAGCGGAAGAG
CAGCTGCGGAAAGAACTGATCGCCAATTTATCCCATGATTTGCGTACGCCGCTTACCAAAATCCGGGCGCATGCCTATAC
GTTGGAGAAAGAGGCTTTGACTCCAGTAGCAAGACAAGCTGTCAACATGATCGAACAGTCGGTTTCGAAAATGGACCGAT
TGATCGAGAATTTGATATCGTATACGCTTTTAAACGCCAAAAAATTGAAATATGAACCGACTCCGACGGATGTGGTCCGG
CTTGCCCGTTCCTTCATCGCCGCCTGGTATCCAGCTTTTGAAAAAGAAGGTTTTTTTATAGATGTCCAGCTGGATGATTT
GGAACAAAAGCATTGGAACGTCGATCCGCTTTGGATGGAACGGATTTTTGACAATTTGTTTCAAAATGTCATCCGCCACG
CCAAGGACGGAAAATATATCGGGTTGAAAACGAAAAAAACCGATTCTTATGACGCGTTGGTCGTGCTTGACCGTGGCAAA
GGATTCCGGCACAAAAGTTCCGAAAAAGGGGCGGGAATCGGGCTTGCCATTGTGGATTTGATGGTGAAGAAGATGGAGTT
GGACTGGAAAATCGAATCATCGGAAACCGGGACAATCATAACAATCATTCATTATCGATCATGCTAG

Upstream 100 bases:

>100_bases
TGATGGTGCACATCCGTTATCTTCGTGAAAAACTGGAAAAAGATCCAAAAAATCCAGAAATCATTGAAACGATCCGGGGA
ATCGGTTATCGGGTGAGAAA

Downstream 100 bases:

>100_bases
GAAAGGAATCCATTTCCTTTCCTTTTTTATTTTTAAACAAATTTTAAACTGTCTCGACACCTCATTTTAACCTTCGATTC
CTATGATGGTATAGCGAGGT

Product: sensor protein vanS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKSVKRLRSLTAKYMAIILTALFLIYLLIIGTSLLVFNVYDHKDPETLQIEKAWHQDARSLKNPGSEDINRMFEKWQNRY
PKARLFWVDSNGRLAAGRNLAADIPKHWNAAYTANFIKARYDNDPFTVIAFPNNDASYGFVVFEIERKLLQPAFTEANAD
FMYFIVPGGIVLFVTVSYLFFLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQLEMAFNQMVDELRESRKREEAEE
QLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVARQAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVR
LARSFIAAWYPAFEKEGFFIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDRGK
GFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITIIHYRSC

Sequences:

>Translated_448_residues
MKSVKRLRSLTAKYMAIILTALFLIYLLIIGTSLLVFNVYDHKDPETLQIEKAWHQDARSLKNPGSEDINRMFEKWQNRY
PKARLFWVDSNGRLAAGRNLAADIPKHWNAAYTANFIKARYDNDPFTVIAFPNNDASYGFVVFEIERKLLQPAFTEANAD
FMYFIVPGGIVLFVTVSYLFFLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQLEMAFNQMVDELRESRKREEAEE
QLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVARQAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVR
LARSFIAAWYPAFEKEGFFIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDRGK
GFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITIIHYRSC
>Mature_448_residues
MKSVKRLRSLTAKYMAIILTALFLIYLLIIGTSLLVFNVYDHKDPETLQIEKAWHQDARSLKNPGSEDINRMFEKWQNRY
PKARLFWVDSNGRLAAGRNLAADIPKHWNAAYTANFIKARYDNDPFTVIAFPNNDASYGFVVFEIERKLLQPAFTEANAD
FMYFIVPGGIVLFVTVSYLFFLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQLEMAFNQMVDELRESRKREEAEE
QLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVARQAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVR
LARSFIAAWYPAFEKEGFFIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDRGK
GFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITIIHYRSC

Specific function: Member of the two-component regulatory system ybdK/ybdJ. Probably activates ybdJ by phosphorylation [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788393, Length=230, Percent_Identity=24.3478260869565, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789149, Length=227, Percent_Identity=24.2290748898678, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787894, Length=298, Percent_Identity=26.8456375838926, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693157, Length=227, Percent_Identity=22.4669603524229, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 51829; Mature: 51829

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVKRLRSLTAKYMAIILTALFLIYLLIIGTSLLVFNVYDHKDPETLQIEKAWHQDARS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCEEEHHHHHHHHHHH
LKNPGSEDINRMFEKWQNRYPKARLFWVDSNGRLAAGRNLAADIPKHWNAAYTANFIKAR
HCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHCCCCCCCCHHHHHHHHEE
YDNDPFTVIAFPNNDASYGFVVFEIERKLLQPAFTEANADFMYFIVPGGIVLFVTVSYLF
ECCCCEEEEEECCCCCCCEEEEEEEHHHHHCHHHCCCCCCEEEEEECCHHHHHHHHHHHH
FLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQLEMAFNQMVDELRESRKREEAEE
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVARQAVNMIEQSVSKMDRLIENLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
YTLLNAKKLKYEPTPTDVVRLARSFIAAWYPAFEKEGFFIDVQLDDLEQKHWNVDPLWME
HHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCCCCCHHHHH
RIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDRGKGFRHKSSEKGAGIGLAIVDL
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH
MVKKMELDWKIESSETGTIITIIHYRSC
HHHHHHCCEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure
MKSVKRLRSLTAKYMAIILTALFLIYLLIIGTSLLVFNVYDHKDPETLQIEKAWHQDARS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCEEEHHHHHHHHHHH
LKNPGSEDINRMFEKWQNRYPKARLFWVDSNGRLAAGRNLAADIPKHWNAAYTANFIKAR
HCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHCCCCCCCCHHHHHHHHEE
YDNDPFTVIAFPNNDASYGFVVFEIERKLLQPAFTEANADFMYFIVPGGIVLFVTVSYLF
ECCCCEEEEEECCCCCCCEEEEEEEHHHHHCHHHCCCCCCEEEEEECCHHHHHHHHHHHH
FLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQLEMAFNQMVDELRESRKREEAEE
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVARQAVNMIEQSVSKMDRLIENLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
YTLLNAKKLKYEPTPTDVVRLARSFIAAWYPAFEKEGFFIDVQLDDLEQKHWNVDPLWME
HHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCCCCCHHHHH
RIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDRGKGFRHKSSEKGAGIGLAIVDL
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH
MVKKMELDWKIESSETGTIITIIHYRSC
HHHHHHCCEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]