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The map label for this gene is araR [H]

Identifier: 138895476

GI number: 138895476

Start: 1940311

End: 1941444

Strand: Direct

Name: araR [H]

Synonym: GTNG_1824

Alternate gene names: 138895476

Gene position: 1940311-1941444 (Clockwise)

Preceding gene: 138895470

Following gene: 138895481

Centisome position: 54.65

GC content: 37.65

Gene sequence:

>1134_bases
GTGAGAGTCCCATTTTATATGCAAATACGTCAGTATATTATGGATCACATCCAACAAGGGAAGTGGAAGCCTAATGATAA
AATTCCTTCTGAAAACGAACTGGCCGAAAAATTTCAGGTCAGCAGAATTACGGTAAAAAAAGCATTAGATGCTTTAGTAG
AGGAAGGAATTATTTATCGCATTCAAGGCAGAGGATCCTTTGTGGCTAAAAAGGAAGATTCCGAACATATTATCTATCCA
AACAACGTTTCCCAACAGAACTCGAGTAAACTGATCGCTTGTATTATTCCACGCTTAAACAGTCAGTTTATCACTATTAT
GATGAGTGAAATTGAAGAACTTCTCGCCCAACATGGGTATCGTGTTATCTTGTGCCAAACATACGATTCGCAACAACTCG
AAACGCAAATATTAAAGGAAGTTCTTCGTTTAGGAGTAGACGGACTGATCATTTATCCTGCAGAAGGAGAAACGTATAAT
GAAGAGATTCTGAAATTAACGATAGAAAAATTTCCTTTAGTCCTAATAGACCGTTATTTTCGGGGAATTGGGGCGAATAG
CGTCTGCACAGATAATGTTTTAGGAGCTTACGAGGCAACAAAACATTTGCTGGAGCTAGGACATACTAAAATAGGGATCG
TCTCTAGTATTCCGGAAGGAACAACTAGCATCGAGGACAGAATTAAAGGATTTGAAAAAGCACTAACAGAGTATAATATT
CCTATTGATCATCGCTTGTATCTCTTAGATCTTCATCTTACACTTGAGGAGCACGATCATATAAATAAGGATAAAATCAA
GAACTTCCTCTCTAACCATCGAGATATCACGGCCCTATTTTTGGTAAATAATGGTCTAACAGTGATAGAAGCAGCCTTAG
AAATGGGTTATACGATTCCACAAGACTTATCTATGATTATGTTTGATGACTATGAGTTTTCACATCTTCACAAAGTTCCG
CCCACATGTATAAGGCAACAAGAAACATTATTGGCGCAAGAAGCTGTAAAACTCATGATATCGACAATTGAAAACCCGTT
GCAAAAGCGTCAGCAAATCTTTGTGCCACCAAAACTTATTGTTAGAAGCTCAACCGATGTATGTCAAACAAGCACTAATC
AACATGTGGATTAA

Upstream 100 bases:

>100_bases
ATTTTTTATTATTTTTAAAACAATAAAATATTCTTTACTTTACAACAAATCAATCAAGTTGTATATTTGTTATATATCAA
GTGAAGGAGGGGGACCTATA

Downstream 100 bases:

>100_bases
CAGTGCCATGTACAGCGAATATTCGCACTGAAAAGAAAACTCCTGCCAAGGTGCACATGAGTGTAAATCAGGCAGGAGTT
AACCGTTTCATCCTTATTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MRVPFYMQIRQYIMDHIQQGKWKPNDKIPSENELAEKFQVSRITVKKALDALVEEGIIYRIQGRGSFVAKKEDSEHIIYP
NNVSQQNSSKLIACIIPRLNSQFITIMMSEIEELLAQHGYRVILCQTYDSQQLETQILKEVLRLGVDGLIIYPAEGETYN
EEILKLTIEKFPLVLIDRYFRGIGANSVCTDNVLGAYEATKHLLELGHTKIGIVSSIPEGTTSIEDRIKGFEKALTEYNI
PIDHRLYLLDLHLTLEEHDHINKDKIKNFLSNHRDITALFLVNNGLTVIEAALEMGYTIPQDLSMIMFDDYEFSHLHKVP
PTCIRQQETLLAQEAVKLMISTIENPLQKRQQIFVPPKLIVRSSTDVCQTSTNQHVD

Sequences:

>Translated_377_residues
MRVPFYMQIRQYIMDHIQQGKWKPNDKIPSENELAEKFQVSRITVKKALDALVEEGIIYRIQGRGSFVAKKEDSEHIIYP
NNVSQQNSSKLIACIIPRLNSQFITIMMSEIEELLAQHGYRVILCQTYDSQQLETQILKEVLRLGVDGLIIYPAEGETYN
EEILKLTIEKFPLVLIDRYFRGIGANSVCTDNVLGAYEATKHLLELGHTKIGIVSSIPEGTTSIEDRIKGFEKALTEYNI
PIDHRLYLLDLHLTLEEHDHINKDKIKNFLSNHRDITALFLVNNGLTVIEAALEMGYTIPQDLSMIMFDDYEFSHLHKVP
PTCIRQQETLLAQEAVKLMISTIENPLQKRQQIFVPPKLIVRSSTDVCQTSTNQHVD
>Mature_377_residues
MRVPFYMQIRQYIMDHIQQGKWKPNDKIPSENELAEKFQVSRITVKKALDALVEEGIIYRIQGRGSFVAKKEDSEHIIYP
NNVSQQNSSKLIACIIPRLNSQFITIMMSEIEELLAQHGYRVILCQTYDSQQLETQILKEVLRLGVDGLIIYPAEGETYN
EEILKLTIEKFPLVLIDRYFRGIGANSVCTDNVLGAYEATKHLLELGHTKIGIVSSIPEGTTSIEDRIKGFEKALTEYNI
PIDHRLYLLDLHLTLEEHDHINKDKIKNFLSNHRDITALFLVNNGLTVIEAALEMGYTIPQDLSMIMFDDYEFSHLHKVP
PTCIRQQETLLAQEAVKLMISTIENPLQKRQQIFVPPKLIVRSSTDVCQTSTNQHVD

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789202, Length=296, Percent_Identity=23.9864864864865, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790194, Length=284, Percent_Identity=25.3521126760563, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1790369, Length=351, Percent_Identity=23.6467236467236, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787948, Length=293, Percent_Identity=25.938566552901, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788474, Length=320, Percent_Identity=25, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082252, Length=63, Percent_Identity=46.031746031746, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789068, Length=334, Percent_Identity=22.7544910179641, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786950, Length=68, Percent_Identity=44.1176470588235, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 43236; Mature: 43236

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVPFYMQIRQYIMDHIQQGKWKPNDKIPSENELAEKFQVSRITVKKALDALVEEGIIYR
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IQGRGSFVAKKEDSEHIIYPNNVSQQNSSKLIACIIPRLNSQFITIMMSEIEELLAQHGY
EECCCCEEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
RVILCQTYDSQQLETQILKEVLRLGVDGLIIYPAEGETYNEEILKLTIEKFPLVLIDRYF
EEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH
RGIGANSVCTDNVLGAYEATKHLLELGHTKIGIVSSIPEGTTSIEDRIKGFEKALTEYNI
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
PIDHRLYLLDLHLTLEEHDHINKDKIKNFLSNHRDITALFLVNNGLTVIEAALEMGYTIP
CCCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCC
QDLSMIMFDDYEFSHLHKVPPTCIRQQETLLAQEAVKLMISTIENPLQKRQQIFVPPKLI
CCCCEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHE
VRSSTDVCQTSTNQHVD
EECCCHHHHCCCCCCCC
>Mature Secondary Structure
MRVPFYMQIRQYIMDHIQQGKWKPNDKIPSENELAEKFQVSRITVKKALDALVEEGIIYR
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IQGRGSFVAKKEDSEHIIYPNNVSQQNSSKLIACIIPRLNSQFITIMMSEIEELLAQHGY
EECCCCEEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
RVILCQTYDSQQLETQILKEVLRLGVDGLIIYPAEGETYNEEILKLTIEKFPLVLIDRYF
EEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH
RGIGANSVCTDNVLGAYEATKHLLELGHTKIGIVSSIPEGTTSIEDRIKGFEKALTEYNI
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
PIDHRLYLLDLHLTLEEHDHINKDKIKNFLSNHRDITALFLVNNGLTVIEAALEMGYTIP
CCCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCC
QDLSMIMFDDYEFSHLHKVPPTCIRQQETLLAQEAVKLMISTIENPLQKRQQIFVPPKLI
CCCCEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHE
VRSSTDVCQTSTNQHVD
EECCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA