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The map label for this gene is cbiC [H]

Identifier: 138895347

GI number: 138895347

Start: 1781438

End: 1782085

Strand: Reverse

Name: cbiC [H]

Synonym: GTNG_1691

Alternate gene names: 138895347

Gene position: 1782085-1781438 (Counterclockwise)

Preceding gene: 138895348

Following gene: 138895346

Centisome position: 50.2

GC content: 55.71

Gene sequence:

>648_bases
ATGGAGTTTCATACCACGTTTCGTCCGGCCACCGTCCAGCCGGAACAAATTGAAGCGCGAAGTTTTCAAATCATTGATGA
AGAGATCGGCGAGCATTCGTTTACGGAAGAACAATATCGAATCGTTCAGCGCGTCATCCATGCATCGGCTGATTTTGAGC
TTGGCAAAAGTCTTCTTTTCCACCCGGATGCGATTCGCTCAGGCATTGATGCCATCCGCAGCGGCAAGCTTGTCGTCGCC
GATGTGCAAATGGTGCAAGCCGGCGTCAATCAAGCGCGGTTGGCGAAGTTCGGCAGCGCGGTGCGTGTCTATATTTCTGA
TGAAGACGTGATCGCGGAAGCGAAACGGCTGAATACGACGAGGGCGATCGTGGCGATGCGCAAAGCGGTGAAAGAAGCGG
AAGGCGGCATTTTCGCCATTGGCAACGCACCGACTGCGCTGTTGGAGCTCATTCGTCTCATCAAAGAAGGAGAAGCGCGG
CCGGGGCTTGTGATCGGCTTGCCGGTCGGATTCGTCTCGGCGGCGGAATCGAAAGAAGAATTGGCGAAGCTCGATGTGCC
GTTCATCACCAATCGCGGCCGCAAAGGAGGAAGCACCGTGACGGTCGCCGCTTTGAATGCGTTATCGCTGCTTGCCGAGC
GAGCGTGA

Upstream 100 bases:

>100_bases
CTCCATGCCGCTGGGTAAAGCGCACACGTAGTGTCAAACAAAATAGATTTGGCTAGCGGGAGTTCCCTGAACATCAAGCG
AAAAAAGGAGCGAGTGAAAG

Downstream 100 bases:

>100_bases
CGAACGATGGAAACAAAAAAAACGCTGCGTGAAGGATATACGACCGGATTGTGCGCGGCAGCGGCCACGAAAGCCGCGCT
CACAGCCCTCATCACTGGCC

Product: cobalamin biosynthesis protein CbiC

Products: NA

Alternate protein names: Cobalt-precorrin isomerase; HBA synthase [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MEFHTTFRPATVQPEQIEARSFQIIDEEIGEHSFTEEQYRIVQRVIHASADFELGKSLLFHPDAIRSGIDAIRSGKLVVA
DVQMVQAGVNQARLAKFGSAVRVYISDEDVIAEAKRLNTTRAIVAMRKAVKEAEGGIFAIGNAPTALLELIRLIKEGEAR
PGLVIGLPVGFVSAAESKEELAKLDVPFITNRGRKGGSTVTVAALNALSLLAERA

Sequences:

>Translated_215_residues
MEFHTTFRPATVQPEQIEARSFQIIDEEIGEHSFTEEQYRIVQRVIHASADFELGKSLLFHPDAIRSGIDAIRSGKLVVA
DVQMVQAGVNQARLAKFGSAVRVYISDEDVIAEAKRLNTTRAIVAMRKAVKEAEGGIFAIGNAPTALLELIRLIKEGEAR
PGLVIGLPVGFVSAAESKEELAKLDVPFITNRGRKGGSTVTVAALNALSLLAERA
>Mature_215_residues
MEFHTTFRPATVQPEQIEARSFQIIDEEIGEHSFTEEQYRIVQRVIHASADFELGKSLLFHPDAIRSGIDAIRSGKLVVA
DVQMVQAGVNQARLAKFGSAVRVYISDEDVIAEAKRLNTTRAIVAMRKAVKEAEGGIFAIGNAPTALLELIRLIKEGEAR
PGLVIGLPVGFVSAAESKEELAKLDVPFITNRGRKGGSTVTVAALNALSLLAERA

Specific function: Catalyzes the conversion of cobalt-precorrin-8X to cobyrinic acid; a methyl migration reaction during the transformation of cobalt-precorrin-3 to form cobyrinic acid [H]

COG id: COG2082

COG function: function code H; Precorrin isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003722 [H]

Pfam domain/function: PF02570 CbiC [H]

EC number: NA

Molecular weight: Translated: 23305; Mature: 23305

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFHTTFRPATVQPEQIEARSFQIIDEEIGEHSFTEEQYRIVQRVIHASADFELGKSLLF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCHHHHC
HPDAIRSGIDAIRSGKLVVADVQMVQAGVNQARLAKFGSAVRVYISDEDVIAEAKRLNTT
CCHHHHHHHHHHHCCCEEEEHHHHHHHCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
RAIVAMRKAVKEAEGGIFAIGNAPTALLELIRLIKEGEARPGLVIGLPVGFVSAAESKEE
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHH
LAKLDVPFITNRGRKGGSTVTVAALNALSLLAERA
HHHCCCCCEECCCCCCCCEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFHTTFRPATVQPEQIEARSFQIIDEEIGEHSFTEEQYRIVQRVIHASADFELGKSLLF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCHHHHC
HPDAIRSGIDAIRSGKLVVADVQMVQAGVNQARLAKFGSAVRVYISDEDVIAEAKRLNTT
CCHHHHHHHHHHHCCCEEEEHHHHHHHCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
RAIVAMRKAVKEAEGGIFAIGNAPTALLELIRLIKEGEARPGLVIGLPVGFVSAAESKEE
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHH
LAKLDVPFITNRGRKGGSTVTVAALNALSLLAERA
HHHCCCCCEECCCCCCCCEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]