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The map label for this gene is ccdA [H]

Identifier: 138894858

GI number: 138894858

Start: 1264688

End: 1265395

Strand: Direct

Name: ccdA [H]

Synonym: GTNG_1194

Alternate gene names: 138894858

Gene position: 1264688-1265395 (Clockwise)

Preceding gene: 138894855

Following gene: 138894859

Centisome position: 35.62

GC content: 48.45

Gene sequence:

>708_bases
ATGAATGATTTAAATATATTTTTAGCGTTTGGCGCCGGATTTTTGTCGTTTATTTCTCCGTGCTGTCTCCCTCTTTACCC
GGCGTTTTTGTCCTATATTACCGGGGTGTCGGTCAGTGAGTTGAAAGAGGAAAATGCGATGATGAATCGTCGCAGCTTAT
GGCATACGCTCTGTTTTTTGCTCGGTTTTTCACTCATTTTTATTTCGCTCGGTTTCGGCACATCGTTTCTCGGCCGATTG
TTTGCTGACTATCAAGATGTGATCCGTCAAATCGGCGCGATTGTGATCGTCGCTTTTGGCCTTGTCGTCGCCGGGCTGTG
GAAGCCGGCATTTCTATTAAAAGACCGACGCATTTCGTTCCGTGAACGGCCGTCAGGTTATGCTGGTTCGGTGCTGATTG
GGATGGCGTTTGCTGCCGGTTGGACGCCGTGCATGGGGCCGATTTTAGTGGCGGTTATCGCCTTGGCGGCAGCCAATCCG
GGTTCAGGGATGATGTACATGCTCGCTTATACGCTCGGTTTTGCTGTTCCGTTTTTCATTCTGTCGTTTTTTATCGGCAA
ACTGCAATGGATTCGGCGCCATAGTGCATCCATTATGAAAGCAGGCGGATATGTCATGATGGCGATGGGGGTCGTCCTTT
ATTTTGACTGGATGACGAAGATCATTGCCTATACCACAAGCATATTTGGTGGATTTACCGGCTTTTAG

Upstream 100 bases:

>100_bases
GAAAATAGAAAAATTGACCAATGAAAACGAGAAATACGTTACGGAAAAGCGGATTTTTGCTAAAATAAAAGTAAAAAATG
AGGCAGGGGCTGATTTAGTG

Downstream 100 bases:

>100_bases
CGCAGCTGAAGCCGCCTTTTGTGCTGCCGGAATAGAAAACCGTTCAGGGGGACGTTGGAAAGATGGCTGCCATTTTGGTT
GTCGATGATGCGAATTTTAT

Product: cytochrome c-type biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNDLNIFLAFGAGFLSFISPCCLPLYPAFLSYITGVSVSELKEENAMMNRRSLWHTLCFLLGFSLIFISLGFGTSFLGRL
FADYQDVIRQIGAIVIVAFGLVVAGLWKPAFLLKDRRISFRERPSGYAGSVLIGMAFAAGWTPCMGPILVAVIALAAANP
GSGMMYMLAYTLGFAVPFFILSFFIGKLQWIRRHSASIMKAGGYVMMAMGVVLYFDWMTKIIAYTTSIFGGFTGF

Sequences:

>Translated_235_residues
MNDLNIFLAFGAGFLSFISPCCLPLYPAFLSYITGVSVSELKEENAMMNRRSLWHTLCFLLGFSLIFISLGFGTSFLGRL
FADYQDVIRQIGAIVIVAFGLVVAGLWKPAFLLKDRRISFRERPSGYAGSVLIGMAFAAGWTPCMGPILVAVIALAAANP
GSGMMYMLAYTLGFAVPFFILSFFIGKLQWIRRHSASIMKAGGYVMMAMGVVLYFDWMTKIIAYTTSIFGGFTGF
>Mature_235_residues
MNDLNIFLAFGAGFLSFISPCCLPLYPAFLSYITGVSVSELKEENAMMNRRSLWHTLCFLLGFSLIFISLGFGTSFLGRL
FADYQDVIRQIGAIVIVAFGLVVAGLWKPAFLLKDRRISFRERPSGYAGSVLIGMAFAAGWTPCMGPILVAVIALAAANP
GSGMMYMLAYTLGFAVPFFILSFFIGKLQWIRRHSASIMKAGGYVMMAMGVVLYFDWMTKIIAYTTSIFGGFTGF

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 25823; Mature: 25823

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLNIFLAFGAGFLSFISPCCLPLYPAFLSYITGVSVSELKEENAMMNRRSLWHTLCFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGFSLIFISLGFGTSFLGRLFADYQDVIRQIGAIVIVAFGLVVAGLWKPAFLLKDRRISF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RERPSGYAGSVLIGMAFAAGWTPCMGPILVAVIALAAANPGSGMMYMLAYTLGFAVPFFI
HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LSFFIGKLQWIRRHSASIMKAGGYVMMAMGVVLYFDWMTKIIAYTTSIFGGFTGF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNDLNIFLAFGAGFLSFISPCCLPLYPAFLSYITGVSVSELKEENAMMNRRSLWHTLCFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGFSLIFISLGFGTSFLGRLFADYQDVIRQIGAIVIVAFGLVVAGLWKPAFLLKDRRISF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RERPSGYAGSVLIGMAFAAGWTPCMGPILVAVIALAAANPGSGMMYMLAYTLGFAVPFFI
HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LSFFIGKLQWIRRHSASIMKAGGYVMMAMGVVLYFDWMTKIIAYTTSIFGGFTGF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]