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The map label for this gene is 138894719

Identifier: 138894719

GI number: 138894719

Start: 1120692

End: 1120928

Strand: Direct

Name: 138894719

Synonym: GTNG_1051

Alternate gene names: NA

Gene position: 1120692-1120928 (Clockwise)

Preceding gene: 138894718

Following gene: 138894720

Centisome position: 31.57

GC content: 54.85

Gene sequence:

>237_bases
ATGAAACCGCTCATTGAAACGATCGTTAAGGCACTTGTCGATTATCCGGAAGCGGTGGCGGTTGAAAGCCGTGAGGAAGA
ACAGGCAGTCATCTACGAGCTGTCGGTGCATGCCGAGGATGTCGGCAAAGTGATCGGCAAGCAAGGACGGACGATCCATG
CGATTCGTACAGTCGTCTACGCTGCCGCGGCCGGGTCGCCAAAGCGGGTTATCGTGCAAGTGAAAGAAAAAGGGTGA

Upstream 100 bases:

>100_bases
ACGGCGCCAAACCGTCGGATACAGTGCGCAGCTTGCTGTCGAAACAAGGTATTTTAGAGAAGTTCCATAACTTAAAATAC
GGCAAATAAGAGAGACAAGC

Downstream 100 bases:

>100_bases
GGACATTCCTCTCCCTTTTTTGATATTGTTGTAAAAGGGGGAAAGGAATGAAGCTGATTCAAACGGTCGAGGTGCGTCAA
ATTGTCACCGAGCGAAGCAA

Product: nucleic acid binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MKPLIETIVKALVDYPEAVAVESREEEQAVIYELSVHAEDVGKVIGKQGRTIHAIRTVVYAAAAGSPKRVIVQVKEKG

Sequences:

>Translated_78_residues
MKPLIETIVKALVDYPEAVAVESREEEQAVIYELSVHAEDVGKVIGKQGRTIHAIRTVVYAAAAGSPKRVIVQVKEKG
>Mature_78_residues
MKPLIETIVKALVDYPEAVAVESREEEQAVIYELSVHAEDVGKVIGKQGRTIHAIRTVVYAAAAGSPKRVIVQVKEKG

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 8484; Mature: 8484

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLIETIVKALVDYPEAVAVESREEEQAVIYELSVHAEDVGKVIGKQGRTIHAIRTVVY
CCHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHH
AAAAGSPKRVIVQVKEKG
HHCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKPLIETIVKALVDYPEAVAVESREEEQAVIYELSVHAEDVGKVIGKQGRTIHAIRTVVY
CCHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHH
AAAAGSPKRVIVQVKEKG
HHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]