Click here to switch to the map view.

The map label for this gene is intR [C]

Identifier: 138894424

GI number: 138894424

Start: 819933

End: 821096

Strand: Reverse

Name: intR [C]

Synonym: GTNG_0752

Alternate gene names: 138894424

Gene position: 821096-819933 (Counterclockwise)

Preceding gene: 138894425

Following gene: 138894420

Centisome position: 23.13

GC content: 37.2

Gene sequence:

>1164_bases
ATGGCGGGAAGTATCGAAAAACGTGGAAAAAACAGCTACAGACTTGTTTACAGTATGGGCTTTGATGCGAATGGCAAAAG
AATTAAACGGACAAAAACAGTGCATGTCAAGACGAAGAAAGAAGCTGAAAAAGAATTAGCAAAGTTTATTGCTGAAATAG
AAGCAGGCGAGTATATAAAACCTGCTAAAATGTCTCTTTCTGACTTCATTCAACTATGGAGAGATAATTACGCTGAAAAG
CAACTTTCCCCAAAAACCTTTGAAACTTACAACAACTATATTAATACAAGAATTATTCCACAGCTCGGGCATCTACAACT
TGCAGATATAAAGCCTATCCACCTTATTCGATTTCTCAATAATTTAAAGAAAGATGAAACCAGGTTAGATGGAAAAAAAG
GTAGTTTAAGCGAGGCTACGATTAACTACTATCGGCGTATACTCAAAAACATCTTTAATCGCGCTGTGGAATGGAAATTC
TTACAAGTCAATCCCGCAGAAAAACTTCCAAAGGAGAAAGAGGATATTGGAAAAGGAGATGTTTACGATGAAAATGAAAC
AAGATTACTATTAAAATGCCTCGAGAAAGAGGATCTAAAATGGAGACTATATTTCACACTTGCACTCACTTGCGGACTGC
GAAAAGGCGAGCTTTTGGCGTTACAGTGGGAAGATATTGACCTTGAGTCTGGTACTTTATATGTAAAACATTCGTTGTCG
TATACAAAAGAAAAAGGTTTTTTTCTAAAAGAACCGAAGTCAAAAAAATCTAAACGTGAAATTGCTATCCCATCTTTCGT
ACTACCTCTATTAAAAAAATACAAAAATGTGAGATTGCGAGAAAAAGAGAAACTGCAAGATGAGTGGGAAGGCGGAAATT
ACAACTTCGTTTTTGCCACATGGAATGGAAAACCACATCATCACTCTTACCCTCGTACCAAATGGGAACGTTTTCTAAAA
CGAAACAATCTTCGTTATATTCGACCACATGATTTACGTCATACTTCAGCAACAATTATGCTGAACAACGGAGTGAACTA
TAAAACAGTAAGTGAACGTTTGGGTCACTCCAGCACACGCATTACGTTCGACTTTTATGTTCACAGAACAAAGGAAGCAG
ATAGATCCGCTGCCGAGTGTTTCGACAATCAATTTGGAGCTTAA

Upstream 100 bases:

>100_bases
GAAAAAATAACCGAATCTAATTCACAAGAAGAAAGCGGGATGAAATAAACAGTAGTTCTTTTCAAGAATCAAGATCAAAT
TGCAACAAGAGGTGGAGAAA

Downstream 100 bases:

>100_bases
GAAAAACATTAAAAGGGACAGTCGTAATGACTGTCCCCAATTTGTCCCCAACTACCTTTTCTTTTCTCTTTTATGTGCAT
GGATAAATAAAAAACCCCTT

Product: DNA integration/recombination/invertion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MAGSIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSLSDFIQLWRDNYAEK
QLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDETRLDGKKGSLSEATINYYRRILKNIFNRAVEWKF
LQVNPAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLS
YTKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLK
RNNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFYVHRTKEADRSAAECFDNQFGA

Sequences:

>Translated_387_residues
MAGSIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSLSDFIQLWRDNYAEK
QLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDETRLDGKKGSLSEATINYYRRILKNIFNRAVEWKF
LQVNPAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLS
YTKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLK
RNNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFYVHRTKEADRSAAECFDNQFGA
>Mature_386_residues
AGSIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSLSDFIQLWRDNYAEKQ
LSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDETRLDGKKGSLSEATINYYRRILKNIFNRAVEWKFL
QVNPAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLSY
TKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLKR
NNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFYVHRTKEADRSAAECFDNQFGA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=365, Percent_Identity=25.7534246575342, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45554; Mature: 45423

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIK
CCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCC
PAKMSLSDFIQLWRDNYAEKQLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLN
CHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCEEECCCCHHHHHHHHH
NLKKDETRLDGKKGSLSEATINYYRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGD
HHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHCCCCHHHCCCCC
VYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLS
CCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCC
YTKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFAT
HHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEE
WNGKPHHHSYPRTKWERFLKRNNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTR
ECCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCE
ITFDFYVHRTKEADRSAAECFDNQFGA
EEEEEEEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGSIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIK
CCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCC
PAKMSLSDFIQLWRDNYAEKQLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLN
CHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCEEECCCCHHHHHHHHH
NLKKDETRLDGKKGSLSEATINYYRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGD
HHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHCCCCHHHCCCCC
VYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLS
CCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCC
YTKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFAT
HHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEE
WNGKPHHHSYPRTKWERFLKRNNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTR
ECCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCE
ITFDFYVHRTKEADRSAAECFDNQFGA
EEEEEEEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]