The gene/protein map for NC_009328 is currently unavailable.
Definition Geobacillus thermodenitrificans NG80-2 chromosome, complete genome.
Accession NC_009328
Length 3,550,319

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The map label for this gene is yhdF [H]

Identifier: 138894294

GI number: 138894294

Start: 690039

End: 690902

Strand: Reverse

Name: yhdF [H]

Synonym: GTNG_0620

Alternate gene names: 138894294

Gene position: 690902-690039 (Counterclockwise)

Preceding gene: 138894295

Following gene: 138894284

Centisome position: 19.46

GC content: 55.09

Gene sequence:

>864_bases
ATGGTCACAAAGCAACAAACGACGCTGCCTCCGCAGCACCAGACACGCCAACCGGGTCTGCAAAGTGAAATGAACCCGCA
GCCAGTCACCATCAAAGACACTTATCGAGGAAGCGGCAGGCTCGAAAATAAAGTCGCTATCATCAGTGGCGGTGACAGCG
GCATCGGTCGGGCGGTCGCGGTTCATTTCGCTAAAGAAGGTGCCGATGTGGCGATCGTTTATTTAAACGAACATAAGGAC
GCCGAGGAAACGAAACGGCTCGTCGAACAGGAAGGAAGACGGTGTCTAGCCATTGCGGGAGACATCGGGGACGAAGCCTT
TTGCAAAGAAGCGGTGAAACAGACCGTCGAGACATTCGGCAAGCTTGACATCGTCGTCAACAACGCGGCCGAACAGCACC
CGCAGCCGAACTTGCTTAACATCACCGCCGCACAGTTAGAGAAAACGTTCCGCACGAACGTGTTCGGCTACTTTTTCTTA
ACGAAAGCGGCGCTCCCGCACTTGAAAAACGGGAGCACCATTATTAACACTGCTTCAGTTACCGCTTATGAAGGAAACGA
GCAACTCATCGACTACTCGGCAACGAAAGGGGCAATCGTTGCTTTTACCCGTTCGCTCGCCAAAGCGCTCGTCGGCCAAG
GCATCCGTGTCAACGGTGTCGCCCCAGGCCCCATTTGGACGCCGCTCATCCCATCGACATTCAAAAGCGAACAAGTCGCC
ACGTTCGGCGCCAACACCCCGATGAAACGGCCGGGCCAGCCGAGTGAAGTCGCCCCGTGCTACGTCTTTTTGGCGAGCGA
TGAATCGTCGTACATGATTGGGCAAATCCTTCACGTTGACGGTGGAAAGTTCGTCAGCGGCTGA

Upstream 100 bases:

>100_bases
GTGGGTGGAAAACTACCGGCTCCTTCATCGTCTCTGTGCACATATTTCCCCTCCTCCGTTCCATACTAACGATGACAATA
CATGCCAAGGAGGAGAACAT

Downstream 100 bases:

>100_bases
CCGCGGCAGCCGCTGACGCCAAACATTTTTTATAAAATTTCGTCACCTTTTCTCACAAAAATATGGCACGATGGTAAAAA
AACGCGTACGATAAAGCTAT

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MVTKQQTTLPPQHQTRQPGLQSEMNPQPVTIKDTYRGSGRLENKVAIISGGDSGIGRAVAVHFAKEGADVAIVYLNEHKD
AEETKRLVEQEGRRCLAIAGDIGDEAFCKEAVKQTVETFGKLDIVVNNAAEQHPQPNLLNITAAQLEKTFRTNVFGYFFL
TKAALPHLKNGSTIINTASVTAYEGNEQLIDYSATKGAIVAFTRSLAKALVGQGIRVNGVAPGPIWTPLIPSTFKSEQVA
TFGANTPMKRPGQPSEVAPCYVFLASDESSYMIGQILHVDGGKFVSG

Sequences:

>Translated_287_residues
MVTKQQTTLPPQHQTRQPGLQSEMNPQPVTIKDTYRGSGRLENKVAIISGGDSGIGRAVAVHFAKEGADVAIVYLNEHKD
AEETKRLVEQEGRRCLAIAGDIGDEAFCKEAVKQTVETFGKLDIVVNNAAEQHPQPNLLNITAAQLEKTFRTNVFGYFFL
TKAALPHLKNGSTIINTASVTAYEGNEQLIDYSATKGAIVAFTRSLAKALVGQGIRVNGVAPGPIWTPLIPSTFKSEQVA
TFGANTPMKRPGQPSEVAPCYVFLASDESSYMIGQILHVDGGKFVSG
>Mature_287_residues
MVTKQQTTLPPQHQTRQPGLQSEMNPQPVTIKDTYRGSGRLENKVAIISGGDSGIGRAVAVHFAKEGADVAIVYLNEHKD
AEETKRLVEQEGRRCLAIAGDIGDEAFCKEAVKQTVETFGKLDIVVNNAAEQHPQPNLLNITAAQLEKTFRTNVFGYFFL
TKAALPHLKNGSTIINTASVTAYEGNEQLIDYSATKGAIVAFTRSLAKALVGQGIRVNGVAPGPIWTPLIPSTFKSEQVA
TFGANTPMKRPGQPSEVAPCYVFLASDESSYMIGQILHVDGGKFVSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=39.2070484581498, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=33.7209302325581, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=33.0578512396694, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=31.2741312741313, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=30.3149606299213, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=28.1632653061224, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=31.7460317460317, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=32.3671497584541, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=31.7460317460317, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.1632653061224, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=32.0652173913043, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=25, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=29.4736842105263, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=30.0395256916996, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI224922801, Length=178, Percent_Identity=32.5842696629214, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI7706318, Length=218, Percent_Identity=27.5229357798165, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI210032112, Length=184, Percent_Identity=30.9782608695652, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=28.9340101522843, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=27.2222222222222, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32455239, Length=170, Percent_Identity=30.5882352941176, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI5031765, Length=170, Percent_Identity=30.5882352941176, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=26.9076305220884, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI310128830, Length=172, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI310115468, Length=172, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI31543615, Length=168, Percent_Identity=31.547619047619, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40254986, Length=199, Percent_Identity=27.6381909547739, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4503301, Length=215, Percent_Identity=26.9767441860465, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1789378, Length=277, Percent_Identity=46.2093862815885, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=36.9047619047619, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=34.6938775510204, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.8582677165354, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.9838056680162, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=31.7073170731707, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.1138211382114, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=34, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=28.9156626506024, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788891, Length=244, Percent_Identity=29.9180327868852, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=25.78125, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=26.2548262548263, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=34.4, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=35.361216730038, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=35.7692307692308, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=34.2307692307692, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=36.0153256704981, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=34.2205323193916, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=30.6122448979592, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=35.2490421455939, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=33.7164750957854, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=34.2205323193916, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.5396825396825, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=34.0823970037453, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=34.6007604562738, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30.7692307692308, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=32.6693227091633, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=31.0861423220974, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=33.7164750957854, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=32.8301886792453, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=33.7209302325581, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=31.3253012048193, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=31.8725099601594, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=32.183908045977, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=31.9230769230769, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=30.3846153846154, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=31.2252964426877, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=29.8850574712644, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=28.4046692607004, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=31.2820512820513, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=31.5508021390374, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=29.3436293436293, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=27.6422764227642, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=27.4611398963731, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=30.6878306878307, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=248, Percent_Identity=23.7903225806452, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=203, Percent_Identity=30.5418719211823, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558006, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=207, Percent_Identity=26.5700483091787, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=29.2307692307692, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322226, Length=210, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=32.8, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=34.136546184739, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=34.136546184739, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=31.8725099601594, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=34.1269841269841, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.8, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=32.421875, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24644337, Length=230, Percent_Identity=34.3478260869565, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=26.6666666666667, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24581726, Length=193, Percent_Identity=27.979274611399, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24665243, Length=215, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221331218, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221510726, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30899; Mature: 30899

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MVTKQQTTLPPQHQTRQPGLQSEMNPQPVTIKDTYRGSGRLENKVAIISGGDSGIGRAVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEE
VHFAKEGADVAIVYLNEHKDAEETKRLVEQEGRRCLAIAGDIGDEAFCKEAVKQTVETFG
EEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
KLDIVVNNAAEQHPQPNLLNITAAQLEKTFRTNVFGYFFLTKAALPHLKNGSTIINTASV
CEEEEECCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
TAYEGNEQLIDYSATKGAIVAFTRSLAKALVGQGIRVNGVAPGPIWTPLIPSTFKSEQVA
EEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEE
TFGANTPMKRPGQPSEVAPCYVFLASDESSYMIGQILHVDGGKFVSG
EECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCEECCC
>Mature Secondary Structure
MVTKQQTTLPPQHQTRQPGLQSEMNPQPVTIKDTYRGSGRLENKVAIISGGDSGIGRAVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEE
VHFAKEGADVAIVYLNEHKDAEETKRLVEQEGRRCLAIAGDIGDEAFCKEAVKQTVETFG
EEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
KLDIVVNNAAEQHPQPNLLNITAAQLEKTFRTNVFGYFFLTKAALPHLKNGSTIINTASV
CEEEEECCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
TAYEGNEQLIDYSATKGAIVAFTRSLAKALVGQGIRVNGVAPGPIWTPLIPSTFKSEQVA
EEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEE
TFGANTPMKRPGQPSEVAPCYVFLASDESSYMIGQILHVDGGKFVSG
EECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]