Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
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Accession | NC_009328 |
Length | 3,550,319 |
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The map label for this gene is yheD [H]
Identifier: 138894221
GI number: 138894221
Start: 608424
End: 609773
Strand: Reverse
Name: yheD [H]
Synonym: GTNG_0547
Alternate gene names: 138894221
Gene position: 609773-608424 (Counterclockwise)
Preceding gene: 138894222
Following gene: 138894220
Centisome position: 17.18
GC content: 51.19
Gene sequence:
>1350_bases ATGACTTATACGTTAATGATTGACGAAACAGGAGAAAACACGGTCACCTTGCCGGCTTCAGTTCAAGCGTCTGGACAAAC GGCAGCTGCGTTTGGCAGCCTGCTTGTCCCATGCCGAATTGTATCCTCTTCCACACTCACTGACTGTGTGATCATAACAA GTGACGTCGCCCGGCGCCTATCCATTCCATTTGCCGCTAACGTTCATGTCTTTTTGACTGCAGAAGCCGTCCATTTCGGC CCGCTTGTCGGCATTTTGACCGCTGGGTTCACCAAGTCGCTCCATCGCCCTGTTGGAAGCCGGAGCTTCTTTTTCGCCAA GTTGTTGGCGCAAGAGAAGCAAGTCGGTGGATTTGCCTTTTTGTTCGGCACCCCCCATATCGATTGGGAAAACGGAACGG TCAACGGCTATTTTTATACAGAACGAGGCTGGGAACGCCATACGGTTCCATTGCCAACGGTCATTTACAACCGCCTGCCA AACCGGCGCATCGAAAATAGCGAAATGTTTCAAACGGTCACCGAGACACTGCAAACCGCCTATGGCATTCCGGTCTTTAA CGGCCATTTTTTTAACAAATGGGATATTTACCGCCGGCTTGCCGCCCATCCTGAAGCACAACCATATTTGCCAGCGACAT CCGCACACATCACAAAGCAGACGATCGAACAGTTTCTCACCCGCTACACGGAAGCATACGTGAAACCGGCTGATGGCAGC CTCGGCCGCGGCATCTATCATTTGACGAAAAAAAACAATGTCTACGAATGCCGCTCTCGCGACGAACAAGGAGAAACGAA AACCGCCGTGTTTCCAACTGCCATGGCGCTATGGCATCATTTACTCACCGACGCGCCGCTTCATCGCTATGTCATTCAGC AGGCTGTGCCGCTCATGACCGTCAATGGTCGACCGACGGATTTTCGCGTCCACACCAATAAAAACGAATACGGCCAATGG CAAGTGAGCGCTATCGCGGCCAAAATCGCCGGAAGACAAAGCATCACCACTCATATGAACAGCGGTGGAATCGTCAAAAC GCTCGAAGAAATTTTTCCGGACACTGCTCAGCGAAACAACATGCTAACCCGCCTGAATCATGTCGCTCTCACGCTTAGCC GGTGCCTTGATGAAACATCAGAAACATTGATCGGTGAAATTGGCTTTGATCTTGGTGTAGATAAACAAGGGGAAATTTGG ATGTTCGAAGCCAACTCCAAACCAGGACGTTCGATTTTTCAGCACCCAGGGCTCAAAGAAGCCGATGAGCGCACGGTATT GCTGCCGCTCGCTTATGCTGTCCACCTAAGCAAAACAGCCATCACCGAACCAGAGGCGCTTTGGTCATGA
Upstream 100 bases:
>100_bases GAAGAAAAGTGATCAACATTCTCCCACCCGAGCAGCAAAACGCGATCTATGAAGCACCGCTCCGCTACTGTTTGTTTTTA GCAAGCGGGGTGAATAGCCG
Downstream 100 bases:
>100_bases TCACAATCGGCTTCCGACGCGACACCGGTGAGTGGGTTTGCAAGGAAAGGAAGGGACTTTACCGATTTGGCAACGGTCAG CTCGCCTTCGCCGCTTCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MTYTLMIDETGENTVTLPASVQASGQTAAAFGSLLVPCRIVSSSTLTDCVIITSDVARRLSIPFAANVHVFLTAEAVHFG PLVGILTAGFTKSLHRPVGSRSFFFAKLLAQEKQVGGFAFLFGTPHIDWENGTVNGYFYTERGWERHTVPLPTVIYNRLP NRRIENSEMFQTVTETLQTAYGIPVFNGHFFNKWDIYRRLAAHPEAQPYLPATSAHITKQTIEQFLTRYTEAYVKPADGS LGRGIYHLTKKNNVYECRSRDEQGETKTAVFPTAMALWHHLLTDAPLHRYVIQQAVPLMTVNGRPTDFRVHTNKNEYGQW QVSAIAAKIAGRQSITTHMNSGGIVKTLEEIFPDTAQRNNMLTRLNHVALTLSRCLDETSETLIGEIGFDLGVDKQGEIW MFEANSKPGRSIFQHPGLKEADERTVLLPLAYAVHLSKTAITEPEALWS
Sequences:
>Translated_449_residues MTYTLMIDETGENTVTLPASVQASGQTAAAFGSLLVPCRIVSSSTLTDCVIITSDVARRLSIPFAANVHVFLTAEAVHFG PLVGILTAGFTKSLHRPVGSRSFFFAKLLAQEKQVGGFAFLFGTPHIDWENGTVNGYFYTERGWERHTVPLPTVIYNRLP NRRIENSEMFQTVTETLQTAYGIPVFNGHFFNKWDIYRRLAAHPEAQPYLPATSAHITKQTIEQFLTRYTEAYVKPADGS LGRGIYHLTKKNNVYECRSRDEQGETKTAVFPTAMALWHHLLTDAPLHRYVIQQAVPLMTVNGRPTDFRVHTNKNEYGQW QVSAIAAKIAGRQSITTHMNSGGIVKTLEEIFPDTAQRNNMLTRLNHVALTLSRCLDETSETLIGEIGFDLGVDKQGEIW MFEANSKPGRSIFQHPGLKEADERTVLLPLAYAVHLSKTAITEPEALWS >Mature_448_residues TYTLMIDETGENTVTLPASVQASGQTAAAFGSLLVPCRIVSSSTLTDCVIITSDVARRLSIPFAANVHVFLTAEAVHFGP LVGILTAGFTKSLHRPVGSRSFFFAKLLAQEKQVGGFAFLFGTPHIDWENGTVNGYFYTERGWERHTVPLPTVIYNRLPN RRIENSEMFQTVTETLQTAYGIPVFNGHFFNKWDIYRRLAAHPEAQPYLPATSAHITKQTIEQFLTRYTEAYVKPADGSL GRGIYHLTKKNNVYECRSRDEQGETKTAVFPTAMALWHHLLTDAPLHRYVIQQAVPLMTVNGRPTDFRVHTNKNEYGQWQ VSAIAAKIAGRQSITTHMNSGGIVKTLEEIFPDTAQRNNMLTRLNHVALTLSRCLDETSETLIGEIGFDLGVDKQGEIWM FEANSKPGRSIFQHPGLKEADERTVLLPLAYAVHLSKTAITEPEALWS
Specific function: Involved in sporulation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Forespore outer membrane; Peripheral membrane protein. Spore wall, spore coat. Note=Forms two rings around the forespore that are offset from its midpoint, before it eventually redistributes to form a shell around the developing spore [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yheC/yheD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013816 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50128; Mature: 49996
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: PS01295 ISPD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTLMIDETGENTVTLPASVQASGQTAAAFGSLLVPCRIVSSSTLTDCVIITSDVARRL CEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHH SIPFAANVHVFLTAEAVHFGPLVGILTAGFTKSLHRPVGSRSFFFAKLLAQEKQVGGFAF CCCEECCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE LFGTPHIDWENGTVNGYFYTERGWERHTVPLPTVIYNRLPNRRIENSEMFQTVTETLQTA EECCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH YGIPVFNGHFFNKWDIYRRLAAHPEAQPYLPATSAHITKQTIEQFLTRYTEAYVKPADGS CCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC LGRGIYHLTKKNNVYECRSRDEQGETKTAVFPTAMALWHHLLTDAPLHRYVIQQAVPLMT CCCCEEEEECCCCEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEE VNGRPTDFRVHTNKNEYGQWQVSAIAAKIAGRQSITTHMNSGGIVKTLEEIFPDTAQRNN ECCCCCEEEEECCCCCCCCEEHHHHHHHHCCCCHHEEECCCCCHHHHHHHHCCCHHHHCC MLTRLNHVALTLSRCLDETSETLIGEIGFDLGVDKQGEIWMFEANSKPGRSIFQHPGLKE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCC ADERTVLLPLAYAVHLSKTAITEPEALWS CCCCEEEEEEHHHHHHHHHHCCCCHHHCC >Mature Secondary Structure TYTLMIDETGENTVTLPASVQASGQTAAAFGSLLVPCRIVSSSTLTDCVIITSDVARRL EEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHH SIPFAANVHVFLTAEAVHFGPLVGILTAGFTKSLHRPVGSRSFFFAKLLAQEKQVGGFAF CCCEECCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE LFGTPHIDWENGTVNGYFYTERGWERHTVPLPTVIYNRLPNRRIENSEMFQTVTETLQTA EECCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH YGIPVFNGHFFNKWDIYRRLAAHPEAQPYLPATSAHITKQTIEQFLTRYTEAYVKPADGS CCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC LGRGIYHLTKKNNVYECRSRDEQGETKTAVFPTAMALWHHLLTDAPLHRYVIQQAVPLMT CCCCEEEEECCCCEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEE VNGRPTDFRVHTNKNEYGQWQVSAIAAKIAGRQSITTHMNSGGIVKTLEEIFPDTAQRNN ECCCCCEEEEECCCCCCCCEEHHHHHHHHCCCCHHEEECCCCCHHHHHHHHCCCHHHHCC MLTRLNHVALTLSRCLDETSETLIGEIGFDLGVDKQGEIWMFEANSKPGRSIFQHPGLKE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCC ADERTVLLPLAYAVHLSKTAITEPEALWS CCCCEEEEEEHHHHHHHHHHCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]