Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
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Accession | NC_009328 |
Length | 3,550,319 |
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The map label for this gene is ybfM [H]
Identifier: 138894190
GI number: 138894190
Start: 578239
End: 578937
Strand: Reverse
Name: ybfM [H]
Synonym: GTNG_0516
Alternate gene names: 138894190
Gene position: 578937-578239 (Counterclockwise)
Preceding gene: 138894198
Following gene: 138894188
Centisome position: 16.31
GC content: 47.93
Gene sequence:
>699_bases TTGATACGTTCAATCGTTTGTCATCGTTCCCCGGCTGCCACTCATTTTCATTATAATGGTCATATAAAAATTGCAGCAAA GCGTGGTGATGATTTGCAACATTATTTGCACCATCTCATCGATCACTTTGGCTATGTCGGCATTATGATCGCGCTTATGC TTGGCATCGTCGGGCTGCCGATTCCTGACGAACTATTGTTGATCTATACCGGTTACCGCGTCTCCACCGGCGCATTTTCG TATCCGCTCGCCTTTCTTGTCTGCTTGTTTGGGGCAACTACCGGCATTTCGCTCGGTTACATTCTTGGAATTACGCTCGG CTTGCCGTTTTTGCATAAATTCGGCCCAAAGCTCCATATAACAGAAAAGCGGCTCCAACAAACGAAAACACTCTTCTCGA AGCTCGGCCCAGCCGTATTATTCATTTGCTATTTCATCCCGGGCGTTCGGCATCTCGCCGCCTTTTGGGCCGGCGTGAAT GCTTACGATTGGAGAAAATTTGCCTTGTTCGCCTACAGTGGAGCGGTGGTGTGGGTCGCGGTTTTTTTGACGATCGGCAC CTATTTCGAAAGCCGCTGGATGGCTTTCAGGCAGTACATCGATGCCTACCGTCCATTTTTATTTTCCGTTTTTCTGGCCG TTTTCATTTTCACGGTTTTCTACTGGCATGCCCAACAAAAACAAAAACCACCGGATTGA
Upstream 100 bases:
>100_bases CGTAATCTCAGCAATCGCCCGTTCCAGCTCTTTCAGCTCGTCCTGCCGCATCCTAATCCCCCCTTTTCCCCTTATCACAA TGTATGAGGAAAAAGGCGTT
Downstream 100 bases:
>100_bases ACGCCGGTGCTTTTTCTTTCTCTACCCGCACTATACATTTTCGGTCGAATCGCGTTGATACGTTTCTATCAACAAGCCCA TAAACAAGCCAAATCCAAAC
Product: alkaline phosphatase like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MIRSIVCHRSPAATHFHYNGHIKIAAKRGDDLQHYLHHLIDHFGYVGIMIALMLGIVGLPIPDELLLIYTGYRVSTGAFS YPLAFLVCLFGATTGISLGYILGITLGLPFLHKFGPKLHITEKRLQQTKTLFSKLGPAVLFICYFIPGVRHLAAFWAGVN AYDWRKFALFAYSGAVVWVAVFLTIGTYFESRWMAFRQYIDAYRPFLFSVFLAVFIFTVFYWHAQQKQKPPD
Sequences:
>Translated_232_residues MIRSIVCHRSPAATHFHYNGHIKIAAKRGDDLQHYLHHLIDHFGYVGIMIALMLGIVGLPIPDELLLIYTGYRVSTGAFS YPLAFLVCLFGATTGISLGYILGITLGLPFLHKFGPKLHITEKRLQQTKTLFSKLGPAVLFICYFIPGVRHLAAFWAGVN AYDWRKFALFAYSGAVVWVAVFLTIGTYFESRWMAFRQYIDAYRPFLFSVFLAVFIFTVFYWHAQQKQKPPD >Mature_232_residues MIRSIVCHRSPAATHFHYNGHIKIAAKRGDDLQHYLHHLIDHFGYVGIMIALMLGIVGLPIPDELLLIYTGYRVSTGAFS YPLAFLVCLFGATTGISLGYILGITLGLPFLHKFGPKLHITEKRLQQTKTLFSKLGPAVLFICYFIPGVRHLAAFWAGVN AYDWRKFALFAYSGAVVWVAVFLTIGTYFESRWMAFRQYIDAYRPFLFSVFLAVFIFTVFYWHAQQKQKPPD
Specific function: Unknown
COG id: COG0586
COG function: function code S; Uncharacterized membrane-associated protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dedA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015414 [H]
Pfam domain/function: PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 26448; Mature: 26448
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRSIVCHRSPAATHFHYNGHIKIAAKRGDDLQHYLHHLIDHFGYVGIMIALMLGIVGLP CCCCHHCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IPDELLLIYTGYRVSTGAFSYPLAFLVCLFGATTGISLGYILGITLGLPFLHKFGPKLHI CCCCEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE TEKRLQQTKTLFSKLGPAVLFICYFIPGVRHLAAFWAGVNAYDWRKFALFAYSGAVVWVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VFLTIGTYFESRWMAFRQYIDAYRPFLFSVFLAVFIFTVFYWHAQQKQKPPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIRSIVCHRSPAATHFHYNGHIKIAAKRGDDLQHYLHHLIDHFGYVGIMIALMLGIVGLP CCCCHHCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IPDELLLIYTGYRVSTGAFSYPLAFLVCLFGATTGISLGYILGITLGLPFLHKFGPKLHI CCCCEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE TEKRLQQTKTLFSKLGPAVLFICYFIPGVRHLAAFWAGVNAYDWRKFALFAYSGAVVWVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VFLTIGTYFESRWMAFRQYIDAYRPFLFSVFLAVFIFTVFYWHAQQKQKPPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]