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The map label for this gene is opuCB [H]

Identifier: 138893951

GI number: 138893951

Start: 312108

End: 312737

Strand: Reverse

Name: opuCB [H]

Synonym: GTNG_0275

Alternate gene names: 138893951

Gene position: 312737-312108 (Counterclockwise)

Preceding gene: 138893952

Following gene: 138893950

Centisome position: 8.81

GC content: 53.17

Gene sequence:

>630_bases
ATGGAATTATTGCAAACGTTTATCGAACGACAAGAAGAGATTTGGATCGCTTTTCAAGAGCACGTACTGTTATCTGCTAT
TGCCATGGGCATCGCCATTGCGGTTGCCGTGCCGCTCGGTGTGGTGTTGACGCGGTATCGCAAACTCGCTGAGCCGATTA
TCGGCATTGCCGCCATCATCCAAACGATTCCAAGCTTAGCATTGCTTGGGTTTATGTTGCCGATTTTCGGCATTGGCAAA
CTGCCGGCGATCATCGCCTTGACGCTTTATGCCCTATTGCCGATTTTGCGTAACACGTACACGGGCATTCTCGGCGTTGA
CCCGGCGCTCGTTGATGCCGGACGAGGGATGGGGATGACATCGCGACAAATTTTATGGATGGTCGAGCTTCCTCTCTCTC
TTCCGGTCATTATGGCCGGCGTGCGCACAGCAACGGTGTTGACGATCGGTGTCGCCGCCTTAGCGACGTTTATCGGCGCT
GGCGGGCTTGGTGACTTGATCGACCGCGGTTTGCGTATCGCCGATAAAAACTTGATTTTAGCCGGCGCCATCCCAGCTGC
CATTTTGGCGATTGTGTTTGACTGGTTGCTGCGCAAAGTGGAAAAGAAAGTGACGCCAAAAGGGCTGTAG

Upstream 100 bases:

>100_bases
AACTAGTCCATCTGCCAACGATTGTTTCACCAAGGAAGGAATAACACGATGACCAAGCGGCTATCCATCTGCCGCTGTTT
TTCCACCAAGGAGGGGTACA

Downstream 100 bases:

>100_bases
CTGTAATCAGCCCTTTGACGCCACCCCAACAAGAATTCGAACACCACTCTCCCCTGCTTACTCGCCCCGAAGCGGGCGAG
AATATTTATATAGATATAAC

Product: glycine betaine/L-proline ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MELLQTFIERQEEIWIAFQEHVLLSAIAMGIAIAVAVPLGVVLTRYRKLAEPIIGIAAIIQTIPSLALLGFMLPIFGIGK
LPAIIALTLYALLPILRNTYTGILGVDPALVDAGRGMGMTSRQILWMVELPLSLPVIMAGVRTATVLTIGVAALATFIGA
GGLGDLIDRGLRIADKNLILAGAIPAAILAIVFDWLLRKVEKKVTPKGL

Sequences:

>Translated_209_residues
MELLQTFIERQEEIWIAFQEHVLLSAIAMGIAIAVAVPLGVVLTRYRKLAEPIIGIAAIIQTIPSLALLGFMLPIFGIGK
LPAIIALTLYALLPILRNTYTGILGVDPALVDAGRGMGMTSRQILWMVELPLSLPVIMAGVRTATVLTIGVAALATFIGA
GGLGDLIDRGLRIADKNLILAGAIPAAILAIVFDWLLRKVEKKVTPKGL
>Mature_209_residues
MELLQTFIERQEEIWIAFQEHVLLSAIAMGIAIAVAVPLGVVLTRYRKLAEPIIGIAAIIQTIPSLALLGFMLPIFGIGK
LPAIIALTLYALLPILRNTYTGILGVDPALVDAGRGMGMTSRQILWMVELPLSLPVIMAGVRTATVLTIGVAALATFIGA
GGLGDLIDRGLRIADKNLILAGAIPAAILAIVFDWLLRKVEKKVTPKGL

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=203, Percent_Identity=35.9605911330049, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788451, Length=210, Percent_Identity=34.7619047619048, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1789033, Length=177, Percent_Identity=35.5932203389831, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22249; Mature: 22249

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLQTFIERQEEIWIAFQEHVLLSAIAMGIAIAVAVPLGVVLTRYRKLAEPIIGIAAII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTIPSLALLGFMLPIFGIGKLPAIIALTLYALLPILRNTYTGILGVDPALVDAGRGMGMT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHCCCCCCCC
SRQILWMVELPLSLPVIMAGVRTATVLTIGVAALATFIGAGGLGDLIDRGLRIADKNLIL
HHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHCCCEEE
AGAIPAAILAIVFDWLLRKVEKKVTPKGL
EHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MELLQTFIERQEEIWIAFQEHVLLSAIAMGIAIAVAVPLGVVLTRYRKLAEPIIGIAAII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTIPSLALLGFMLPIFGIGKLPAIIALTLYALLPILRNTYTGILGVDPALVDAGRGMGMT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHCCCCCCCC
SRQILWMVELPLSLPVIMAGVRTATVLTIGVAALATFIGAGGLGDLIDRGLRIADKNLIL
HHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHCCCEEE
AGAIPAAILAIVFDWLLRKVEKKVTPKGL
EHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]