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The map label for this gene is secY [H]

Identifier: 138893804

GI number: 138893804

Start: 134611

End: 135903

Strand: Direct

Name: secY [H]

Synonym: GTNG_0125

Alternate gene names: 138893804

Gene position: 134611-135903 (Clockwise)

Preceding gene: 138893803

Following gene: 138893805

Centisome position: 3.79

GC content: 47.49

Gene sequence:

>1293_bases
ATGTTTCGGACAATCTCCAACTTTATGCGCGTCAGTGATATTCGAAACAAAATCATTTTCACTCTCCTTATGCTAATCGT
GTTCCGCATCGGAACATTCATCCCTGTTCCGAGCGTGAACACCGATGTATTAAAACTGCAAGACCAATTAAATGCATTCG
GCGTCCTGAACATTTTTGGCGGCGGGGCGCTGCAAAACTTTTCGATTTTTGCCATGGGGGTTATGCCCTACATTACGGCA
TCAATTATCGTCCAGCTGTTGCAAATGGACGTCGTTCCAAAATTCGCGGAATGGTCGAAGCAAGGCGAGATGGGCCGACG
TAAATTAGCTCAGTTTACCCGCTATTTTACGATCGTGCTTGGATTTATCCAAGCGCTCGGCATGTCGTACGGCTTCAACA
ATTTGGCCGGCGGGATGCTTATTCAAAATCCGGGCATTGGCACATATTTGCTGATCGCGGTTGTTTTGACCGCTGGCACA
GCTTTTTTAATGTGGCTCGGCGAACAGATCACTGCCAAAGGAGTCGGGAACGGAATTTCGATCATTATTTTTGCTGGGAT
CGTCTCCGGCATTCCGACGATTTTGAACCAAATTTACGCCCAACAATTTGAAAATGTCGGGGAAGACTTGTTTTTACGTA
TTGTCCGGTTGCTGCTTGTAGCGTTGGCAGTTGTTGCTGTTATTGTTGGCGTTATTTACATTCAGCAGGCGTTCCGGAAA
ATTCCGATTCAATATGCGAAGCGGCTTGAAGGCCGAAACCCCGTCGGCGGCCATTCGACTCATTTGCCGCTCAAAGTGAA
TCCAGCCGGGGTCATTCCGGTCATTTTTGCCGTATCCTTTTTGATTGCACCACCGACGATTGCATCGTTTTTTGGCACGA
ATGATGTAACATTGTGGATTCGCCGAACGTTTGACTATACTCATCCGGTTGGCATGACGATCTATGTCGTGCTTATTATC
GCGTTTACGTACTTTTACGCGTTTGTTCAAGTCAACCCGGAACAGATGGCTGATAACTTGAAAAAGCAAGGCGGTTACAT
CCCAGGTATTCGCCCTGGAAAAAATACACAAGAGTACGTAACGAGAATTTTATACCGATTGACGCTCGTCGGCTCGCTCT
TTTTAGCGTTCATTGCCGTGCTGCCGGTGTTCTTTGTAAACTTTGCGAACTTGCCGCCTTCCGCACAGATCGGTGGTACG
AGCTTGCTCATCGTTGTCGGCGTGGCCCTTGAGACGATGAAACAGCTTGAGAGCCAGCTGGTAAAACGCCATTACCGAGG
ATTCATCAAGTAA

Upstream 100 bases:

>100_bases
AAGGTCAAATCGAGAAAAAGTTAACGGTCAAAGCGCATAAGTTCTCGGCATCGGCAAAAGAGGCTATCGAGGCGGCTGGC
GGTAAAACTGAGGTGATTTA

Downstream 100 bases:

>100_bases
AGAAGGCAAGAGTCGACATCTCTTGTGCGTGGGGGGAGTTAGGATGAATTTAGTGCTGATGGGGCTGCCAGGTGCCGGCA
AAGGCACGCAAGCCGAGAAA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MFRTISNFMRVSDIRNKIIFTLLMLIVFRIGTFIPVPSVNTDVLKLQDQLNAFGVLNIFGGGALQNFSIFAMGVMPYITA
SIIVQLLQMDVVPKFAEWSKQGEMGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLAGGMLIQNPGIGTYLLIAVVLTAGT
AFLMWLGEQITAKGVGNGISIIIFAGIVSGIPTILNQIYAQQFENVGEDLFLRIVRLLLVALAVVAVIVGVIYIQQAFRK
IPIQYAKRLEGRNPVGGHSTHLPLKVNPAGVIPVIFAVSFLIAPPTIASFFGTNDVTLWIRRTFDYTHPVGMTIYVVLII
AFTYFYAFVQVNPEQMADNLKKQGGYIPGIRPGKNTQEYVTRILYRLTLVGSLFLAFIAVLPVFFVNFANLPPSAQIGGT
SLLIVVGVALETMKQLESQLVKRHYRGFIK

Sequences:

>Translated_430_residues
MFRTISNFMRVSDIRNKIIFTLLMLIVFRIGTFIPVPSVNTDVLKLQDQLNAFGVLNIFGGGALQNFSIFAMGVMPYITA
SIIVQLLQMDVVPKFAEWSKQGEMGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLAGGMLIQNPGIGTYLLIAVVLTAGT
AFLMWLGEQITAKGVGNGISIIIFAGIVSGIPTILNQIYAQQFENVGEDLFLRIVRLLLVALAVVAVIVGVIYIQQAFRK
IPIQYAKRLEGRNPVGGHSTHLPLKVNPAGVIPVIFAVSFLIAPPTIASFFGTNDVTLWIRRTFDYTHPVGMTIYVVLII
AFTYFYAFVQVNPEQMADNLKKQGGYIPGIRPGKNTQEYVTRILYRLTLVGSLFLAFIAVLPVFFVNFANLPPSAQIGGT
SLLIVVGVALETMKQLESQLVKRHYRGFIK
>Mature_430_residues
MFRTISNFMRVSDIRNKIIFTLLMLIVFRIGTFIPVPSVNTDVLKLQDQLNAFGVLNIFGGGALQNFSIFAMGVMPYITA
SIIVQLLQMDVVPKFAEWSKQGEMGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLAGGMLIQNPGIGTYLLIAVVLTAGT
AFLMWLGEQITAKGVGNGISIIIFAGIVSGIPTILNQIYAQQFENVGEDLFLRIVRLLLVALAVVAVIVGVIYIQQAFRK
IPIQYAKRLEGRNPVGGHSTHLPLKVNPAGVIPVIFAVSFLIAPPTIASFFGTNDVTLWIRRTFDYTHPVGMTIYVVLII
AFTYFYAFVQVNPEQMADNLKKQGGYIPGIRPGKNTQEYVTRILYRLTLVGSLFLAFIAVLPVFFVNFANLPPSAQIGGT
SLLIVVGVALETMKQLESQLVKRHYRGFIK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=429, Percent_Identity=45.9207459207459, Blast_Score=306, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47545; Mature: 47545

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCC
>Mature Secondary Structure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HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]