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The map label for this gene is rlmH

Identifier: 126696261

GI number: 126696261

Start: 795051

End: 795467

Strand: Reverse

Name: rlmH

Synonym: P9301_09231

Alternate gene names: 126696261

Gene position: 795467-795051 (Counterclockwise)

Preceding gene: 126696262

Following gene: 126696260

Centisome position: 48.45

GC content: 28.3

Gene sequence:

>417_bases
ATGCTTCAGAGTAATAGATTAGCAATTTATGCTATCGGCAAAATAAAGAAACTTTGGATTAGAGATGGAATTAATCAATA
CAAAAAAAGAATGCCTGAACTTATCATTAATGAGTTAAAGACTTTTAATTTAAATAATCTTAGATCCAATAACAATATTA
TTATCTGCTTAAGTGAAGAAGGGAAACAGTTTAATTCAGTTGAACTATGTTCCTTACTCTTAAATTTTAAAAATAAAAAA
ATTAATTTCTTAATCGGTGATACTGATGGAGTTAGTTCAGATATAAAAGAAAAATCAGATCTTGTACTAAGCCTGTCTCC
TCTAACTTTTCCTCATGAATTAGCTAGATTAATCCTAATCGAGCAAATCTATAGAGCTATTTCTATATCTAACAACTCCC
CTTACCATCGTTCTTAA

Upstream 100 bases:

>100_bases
TCTAAAAAAGATAATTTTTCCAAGAAATTAACAACAGAAGAGGAACTATATGATGAATTTAATTATCTTCTTGATGAATA
ATTAGTTTTAATATTTACTT

Downstream 100 bases:

>100_bases
AAGATTAAATTCAATCTAAAATTAATCTATAAAAGTTTAATAACTAACTATTTTTTGATTTTTTGATATATAGTACATAT
ATACTATTGATTTAAATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEEGKQFNSVELCSLLLNFKNKK
INFLIGDTDGVSSDIKEKSDLVLSLSPLTFPHELARLILIEQIYRAISISNNSPYHRS

Sequences:

>Translated_138_residues
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEEGKQFNSVELCSLLLNFKNKK
INFLIGDTDGVSSDIKEKSDLVLSLSPLTFPHELARLILIEQIYRAISISNNSPYHRS
>Mature_138_residues
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEEGKQFNSVELCSLLLNFKNKK
INFLIGDTDGVSSDIKEKSDLVLSLSPLTFPHELARLILIEQIYRAISISNNSPYHRS

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family

Homologues:

Organism=Escherichia coli, GI1786855, Length=153, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLMH_PROM0 (A3PCS1)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001091147.1
- ProteinModelPortal:   A3PCS1
- SMR:   A3PCS1
- STRING:   A3PCS1
- GeneID:   4912311
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_09231
- eggNOG:   COG1576
- HOGENOM:   HBG622807
- OMA:   IRDGINQ
- ProtClustDB:   CLSK922031
- BioCyc:   PMAR167546:P9301ORF_0940-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00658
- InterPro:   IPR003742
- PIRSF:   PIRSF004505

Pfam domain/function: PF02590 SPOUT_MTase

EC number: NA

Molecular weight: Translated: 15878; Mature: 15878

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEE
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
GKQFNSVELCSLLLNFKNKKINFLIGDTDGVSSDIKEKSDLVLSLSPLTFPHELARLILI
CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHH
EQIYRAISISNNSPYHRS
HHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEE
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
GKQFNSVELCSLLLNFKNKKINFLIGDTDGVSSDIKEKSDLVLSLSPLTFPHELARLILI
CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHH
EQIYRAISISNNSPYHRS
HHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA